Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 8 | 8.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| ECFAACHI_52 | 3722 | 4873 | tufA | 0.0 | elongation factor Tu | 86.46 | 97.21 | AHM69299 |
| ECFAACHI_47 | 1473 | 604 | pdxS | 1.42e-153 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| ECFAACHI_4 | 55916 | 56692 | CodY | 2.44e-128 | nutrient-responsive regulator | 81.85 | 100.00 | ACJ80679 |
| ECFAACHI_4 | 55916 | 56692 | codY | 6.89e-125 | global regulator and isoleucine sensor | 80.69 | 100.00 | ASW39076 |
| ECFAACHI_117 | 314 | 883 | ClpP | 8.28e-105 | part of proteolytic complex | 83.68 | 97.44 | BAB94595 |
| ECFAACHI_10 | 24376 | 24768 | spxA1 | 3.36e-73 | redox-responsive transcription factor | 88.55 | 100.00 | AAF21893 |
| ECFAACHI_10 | 24376 | 24768 | spx | 7.28e-68 | essential gene which is a thiol/oxidative stress sensor | 80.92 | 100.00 | BAB57159 |
| ECFAACHI_25 | 1325 | 1083 | SpoVG | 2.93e-40 | RNA-binding protein | 82.72 | 79.41 | AAT02994 |
| ECFAACHI_197 | 2752 | 2949 | CspA | 3.50e-32 | cold shock protein | 86.36 | 100.00 | CAA62903 |
| ECFAACHI_62 | 16964 | 16770 | CspD | 3.84e-30 | cold shock protein | 81.54 | 98.48 | CAC99957 |
| ECFAACHI_62 | 16964 | 16767 | CspB | 2.58e-29 | cold shock protein | 80.30 | 100.00 | CAD00094 |
| ECFAACHI_197 | 2752 | 2946 | CspR | 6.49e-29 | cold shock protein | 81.54 | 98.48 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| ECFAACHI_1 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_3 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_4 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_5 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_6 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_7 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_8 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_9 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_10 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_11 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_12 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_13 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_14 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_15 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_16 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_17 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_18 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_19 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_20 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_21 | 1.0 | 0.0 | 1.0 |
| ECFAACHI_22 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_23 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_24 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_25 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_26 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_27 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_28 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_29 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_30 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_31 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_32 | 1.0 | 0.0 | 1.0 |
| ECFAACHI_33 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_34 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_35 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_37 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_38 | 1.0 | 0.0 | 1.0 |
| ECFAACHI_39 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_40 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_41 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_42 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_43 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_44 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_45 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_46 | 1.0 | 0.0 | 1.0 |
| ECFAACHI_47 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_49 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_51 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_52 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_53 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_55 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_56 | 1.0 | 0.0 | 1.0 |
| ECFAACHI_57 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_58 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_59 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_60 | 1.0 | 0.0 | 1.0 |
| ECFAACHI_61 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_62 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_63 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_64 | 1.0 | 0.0 | 1.0 |
| ECFAACHI_65 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_66 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_67 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_68 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_69 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_70 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_71 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_72 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_73 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_74 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_75 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_76 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_77 | 1.0 | 0.0 | 1.0 |
| ECFAACHI_78 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_79 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_80 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_81 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_82 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_83 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_84 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_85 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_86 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_87 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_88 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_89 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_90 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_91 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_93 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_94 | 1.0 | 0.0 | 1.0 |
| ECFAACHI_95 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_96 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_97 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_98 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_99 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_100 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_101 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_102 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_103 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_104 | 1.0 | 0.0 | 1.0 |
| ECFAACHI_105 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_106 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_108 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_109 | 1.0 | 0.0 | 1.0 |
| ECFAACHI_111 | 1.0 | 0.0 | 1.0 |
| ECFAACHI_112 | 1.0 | 0.0 | 1.0 |
| ECFAACHI_113 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_114 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_115 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_116 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_117 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_118 | 1.0 | 0.0 | 1.0 |
| ECFAACHI_119 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_120 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_121 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_122 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_123 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_124 | 1.0 | 0.0 | 1.0 |
| ECFAACHI_125 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_126 | 1.0 | 0.0 | 1.0 |
| ECFAACHI_127 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_128 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_129 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_130 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_131 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_132 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_133 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_134 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_135 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_136 | 1.0 | 0.0 | 1.0 |
| ECFAACHI_137 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_138 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_139 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_140 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_141 | 1.0 | 0.0 | 1.0 |
| ECFAACHI_142 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_143 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_146 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_147 | 1.0 | 0.0 | 1.0 |
| ECFAACHI_148 | 1.0 | 0.0 | 1.0 |
| ECFAACHI_149 | 1.0 | 0.0 | 1.0 |
| ECFAACHI_150 | 1.0 | 0.0 | 1.0 |
| ECFAACHI_151 | 1.0 | 0.0 | 1.0 |
| ECFAACHI_152 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_153 | 1.0 | 0.0 | 1.0 |
| ECFAACHI_154 | 1.0 | 0.0 | 1.0 |
| ECFAACHI_155 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_156 | 1.0 | 0.0 | 1.0 |
| ECFAACHI_157 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_159 | 1.0 | 0.0 | 1.0 |
| ECFAACHI_160 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_161 | 1.0 | 0.0 | 1.0 |
| ECFAACHI_162 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_163 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_165 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_166 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_167 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_168 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_169 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_170 | 1.0 | 0.0 | 1.0 |
| ECFAACHI_171 | 1.0 | 0.0 | 1.0 |
| ECFAACHI_174 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_175 | 1.0 | 0.0 | 1.0 |
| ECFAACHI_176 | 1.0 | 0.0 | 1.0 |
| ECFAACHI_177 | 1.0 | 0.0 | 1.0 |
| ECFAACHI_178 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_179 | 1.0 | 0.0 | 1.0 |
| ECFAACHI_180 | 1.0 | 0.0 | 1.0 |
| ECFAACHI_182 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_183 | 1.0 | 0.0 | 1.0 |
| ECFAACHI_185 | 1.0 | 0.0 | 1.0 |
| ECFAACHI_187 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_189 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_190 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_191 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_192 | 1.0 | 0.0 | 1.0 |
| ECFAACHI_194 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_195 | 1.0 | 0.0 | 1.0 |
| ECFAACHI_196 | 1.0 | 0.0 | 1.0 |
| ECFAACHI_197 | 1.0 | 0.0 | 1.0 |
| ECFAACHI_199 | 1.0 | 0.0 | 1.0 |
| ECFAACHI_201 | 1.0 | 0.0 | 1.0 |
| ECFAACHI_202 | 0.0 | 1.0 | 0.0 |
| ECFAACHI_203 | 1.0 | 0.0 | 1.0 |
| ECFAACHI_204 | 1.0 | 0.0 | 1.0 |
| ECFAACHI_205 | 1.0 | 0.0 | 1.0 |
| ECFAACHI_206 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| ECFAACHI_17 | 3784 | 37354 | False | Siphoviridae | VOG0535, VOG0595, VOG4799, VOG4799, VOG0025, VOG0598, VOG0226, VOG0536, VOG8542, VOG10041, VOG2786, VOG4567, VOG6581, VOG0085, VOG0198, VOG4544, VOG4556, VOG4568, VOG4553, VOG0204, VOG4589, VOG0704, VOG4586, VOG5852, VOG6163, VOG4605, VOG4599, VOG4763, VOG3498, VOG8197, VOG4918 |
Phigaro v2.4.0 (Database: Jan. 2024 release)