Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 8 | 8.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LKAKANBA_3 | 32043 | 33194 | tufA | 0.0 | elongation factor Tu | 86.46 | 97.21 | AHM69299 |
| LKAKANBA_46 | 4836 | 5705 | pdxS | 1.48e-152 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| LKAKANBA_7 | 101395 | 100619 | CodY | 7.97e-128 | nutrient-responsive regulator | 81.85 | 100.00 | ACJ80679 |
| LKAKANBA_7 | 101395 | 100619 | codY | 2.25e-124 | global regulator and isoleucine sensor | 80.69 | 100.00 | ASW39076 |
| LKAKANBA_1 | 47017 | 47586 | ClpP | 3.92e-104 | part of proteolytic complex | 83.68 | 97.44 | BAB94595 |
| LKAKANBA_37 | 36403 | 36011 | spxA1 | 5.11e-73 | redox-responsive transcription factor | 88.55 | 100.00 | AAF21893 |
| LKAKANBA_37 | 36403 | 36011 | spx | 1.11e-67 | essential gene which is a thiol/oxidative stress sensor | 80.92 | 100.00 | BAB57159 |
| LKAKANBA_25 | 18347 | 18589 | SpoVG | 4.36e-39 | RNA-binding protein | 81.48 | 79.41 | AAT02994 |
| LKAKANBA_50 | 5593 | 5790 | CspA | 5.15e-31 | cold shock protein | 86.36 | 100.00 | CAA62903 |
| LKAKANBA_94 | 8144 | 8338 | CspD | 2.74e-30 | cold shock protein | 81.54 | 98.48 | CAC99957 |
| LKAKANBA_94 | 8144 | 8341 | CspB | 1.84e-29 | cold shock protein | 80.30 | 100.00 | CAD00094 |
| LKAKANBA_50 | 5593 | 5787 | CspR | 9.55e-28 | cold shock protein | 81.54 | 98.48 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LKAKANBA_1 | 0.0 | 1.0 | 0.0 |
| LKAKANBA_2 | 0.0 | 1.0 | 0.0 |
| LKAKANBA_3 | 0.0 | 1.0 | 0.0 |
| LKAKANBA_4 | 0.0 | 1.0 | 0.0 |
| LKAKANBA_5 | 0.0 | 1.0 | 0.0 |
| LKAKANBA_6 | 0.0 | 1.0 | 0.0 |
| LKAKANBA_7 | 0.0 | 1.0 | 0.0 |
| LKAKANBA_8 | 0.0 | 1.0 | 0.0 |
| LKAKANBA_9 | 0.0 | 1.0 | 0.0 |
| LKAKANBA_10 | 0.0 | 1.0 | 0.0 |
| LKAKANBA_11 | 0.0 | 1.0 | 0.0 |
| LKAKANBA_12 | 1.0 | 0.0 | 1.0 |
| LKAKANBA_13 | 0.0 | 1.0 | 0.0 |
| LKAKANBA_15 | 1.0 | 0.0 | 1.0 |
| LKAKANBA_16 | 1.0 | 0.0 | 1.0 |
| LKAKANBA_17 | 0.0 | 1.0 | 0.0 |
| LKAKANBA_18 | 0.0 | 1.0 | 0.0 |
| LKAKANBA_19 | 0.0 | 1.0 | 0.0 |
| LKAKANBA_20 | 0.0 | 1.0 | 0.0 |
| LKAKANBA_21 | 0.0 | 1.0 | 0.0 |
| LKAKANBA_22 | 0.0 | 1.0 | 0.0 |
| LKAKANBA_23 | 0.0 | 1.0 | 0.0 |
| LKAKANBA_24 | 0.0 | 1.0 | 0.0 |
| LKAKANBA_25 | 0.0 | 1.0 | 0.0 |
| LKAKANBA_26 | 0.0 | 1.0 | 0.0 |
| LKAKANBA_27 | 1.0 | 0.0 | 1.0 |
| LKAKANBA_28 | 0.0 | 1.0 | 0.0 |
| LKAKANBA_29 | 0.0 | 1.0 | 0.0 |
| LKAKANBA_30 | 0.0 | 1.0 | 0.0 |
| LKAKANBA_31 | 1.0 | 0.0 | 1.0 |
| LKAKANBA_32 | 1.0 | 0.0 | 1.0 |
| LKAKANBA_33 | 0.0 | 1.0 | 0.0 |
| LKAKANBA_34 | 1.0 | 0.0 | 1.0 |
| LKAKANBA_35 | 0.0 | 1.0 | 0.0 |
| LKAKANBA_36 | 0.0 | 1.0 | 0.0 |
| LKAKANBA_37 | 0.0 | 1.0 | 0.0 |
| LKAKANBA_38 | 0.0 | 1.0 | 0.0 |
| LKAKANBA_39 | 0.0 | 1.0 | 0.0 |
| LKAKANBA_40 | 0.0 | 1.0 | 0.0 |
| LKAKANBA_41 | 0.0 | 1.0 | 0.0 |
| LKAKANBA_42 | 0.0 | 1.0 | 0.0 |
| LKAKANBA_43 | 0.0 | 1.0 | 0.0 |
| LKAKANBA_44 | 0.0 | 1.0 | 0.0 |
| LKAKANBA_45 | 1.0 | 0.0 | 1.0 |
| LKAKANBA_46 | 0.0 | 1.0 | 0.0 |
| LKAKANBA_47 | 0.0 | 1.0 | 0.0 |
| LKAKANBA_48 | 0.0 | 1.0 | 0.0 |
| LKAKANBA_49 | 0.0 | 1.0 | 0.0 |
| LKAKANBA_50 | 0.0 | 1.0 | 0.0 |
| LKAKANBA_51 | 0.0 | 1.0 | 0.0 |
| LKAKANBA_52 | 0.0 | 1.0 | 0.0 |
| LKAKANBA_53 | 1.0 | 0.0 | 1.0 |
| LKAKANBA_54 | 0.0 | 1.0 | 0.0 |
| LKAKANBA_55 | 0.0 | 1.0 | 0.0 |
| LKAKANBA_56 | 0.0 | 1.0 | 0.0 |
| LKAKANBA_57 | 0.0 | 1.0 | 0.0 |
| LKAKANBA_60 | 1.0 | 0.0 | 1.0 |
| LKAKANBA_61 | 1.0 | 0.0 | 1.0 |
| LKAKANBA_63 | 0.0 | 1.0 | 0.0 |
| LKAKANBA_64 | 0.0 | 1.0 | 0.0 |
| LKAKANBA_66 | 1.0 | 0.0 | 1.0 |
| LKAKANBA_67 | 0.0 | 1.0 | 0.0 |
| LKAKANBA_68 | 0.0 | 1.0 | 0.0 |
| LKAKANBA_69 | 0.0 | 1.0 | 0.0 |
| LKAKANBA_70 | 0.0 | 1.0 | 0.0 |
| LKAKANBA_71 | 0.0 | 1.0 | 0.0 |
| LKAKANBA_72 | 0.0 | 1.0 | 0.0 |
| LKAKANBA_73 | 1.0 | 0.0 | 1.0 |
| LKAKANBA_74 | 0.0 | 1.0 | 0.0 |
| LKAKANBA_75 | 0.0 | 1.0 | 0.0 |
| LKAKANBA_76 | 0.0 | 1.0 | 0.0 |
| LKAKANBA_77 | 1.0 | 0.0 | 1.0 |
| LKAKANBA_78 | 1.0 | 0.0 | 1.0 |
| LKAKANBA_79 | 0.0 | 1.0 | 0.0 |
| LKAKANBA_80 | 0.0 | 1.0 | 0.0 |
| LKAKANBA_81 | 0.0 | 1.0 | 0.0 |
| LKAKANBA_82 | 0.0 | 1.0 | 0.0 |
| LKAKANBA_83 | 0.0 | 1.0 | 0.0 |
| LKAKANBA_84 | 0.0 | 1.0 | 0.0 |
| LKAKANBA_85 | 1.0 | 0.0 | 1.0 |
| LKAKANBA_86 | 0.0 | 1.0 | 0.0 |
| LKAKANBA_87 | 1.0 | 0.0 | 1.0 |
| LKAKANBA_88 | 1.0 | 0.0 | 1.0 |
| LKAKANBA_90 | 0.0 | 1.0 | 0.0 |
| LKAKANBA_91 | 0.0 | 1.0 | 0.0 |
| LKAKANBA_92 | 0.0 | 1.0 | 0.0 |
| LKAKANBA_93 | 0.0 | 1.0 | 0.0 |
| LKAKANBA_94 | 0.0 | 1.0 | 0.0 |
| LKAKANBA_95 | 0.0 | 1.0 | 0.0 |
| LKAKANBA_96 | 1.0 | 0.0 | 1.0 |
| LKAKANBA_97 | 0.0 | 1.0 | 0.0 |
| LKAKANBA_98 | 1.0 | 0.0 | 1.0 |
| LKAKANBA_99 | 0.0 | 1.0 | 0.0 |
| LKAKANBA_100 | 1.0 | 0.0 | 1.0 |
| LKAKANBA_102 | 0.0 | 1.0 | 0.0 |
| LKAKANBA_103 | 1.0 | 0.0 | 1.0 |
| LKAKANBA_104 | 0.0 | 1.0 | 0.0 |
| LKAKANBA_105 | 0.0 | 1.0 | 0.0 |
| LKAKANBA_106 | 0.0 | 1.0 | 0.0 |
| LKAKANBA_108 | 0.0 | 1.0 | 0.0 |
| LKAKANBA_109 | 1.0 | 0.0 | 1.0 |
| LKAKANBA_110 | 0.0 | 1.0 | 0.0 |
| LKAKANBA_111 | 1.0 | 0.0 | 1.0 |
| LKAKANBA_112 | 1.0 | 0.0 | 1.0 |
| LKAKANBA_114 | 1.0 | 0.0 | 1.0 |
| LKAKANBA_115 | 0.0 | 1.0 | 0.0 |
| LKAKANBA_116 | 1.0 | 0.0 | 1.0 |
| LKAKANBA_117 | 0.0 | 1.0 | 0.0 |
| LKAKANBA_118 | 1.0 | 0.0 | 1.0 |
| LKAKANBA_120 | 0.0 | 1.0 | 0.0 |
| LKAKANBA_122 | 1.0 | 0.0 | 1.0 |
| LKAKANBA_123 | 1.0 | 0.0 | 1.0 |
| LKAKANBA_124 | 1.0 | 0.0 | 1.0 |
| LKAKANBA_126 | 0.0 | 1.0 | 0.0 |
| LKAKANBA_127 | 1.0 | 0.0 | 1.0 |
| LKAKANBA_128 | 1.0 | 0.0 | 1.0 |
| LKAKANBA_129 | 1.0 | 0.0 | 1.0 |
| LKAKANBA_130 | 0.0 | 1.0 | 0.0 |
| LKAKANBA_131 | 1.0 | 0.0 | 1.0 |
| LKAKANBA_134 | 1.0 | 0.0 | 1.0 |
| LKAKANBA_135 | 1.0 | 0.0 | 1.0 |
| LKAKANBA_136 | 0.0 | 1.0 | 0.0 |
| LKAKANBA_137 | 0.0 | 1.0 | 0.0 |
| LKAKANBA_139 | 1.0 | 0.0 | 1.0 |
| LKAKANBA_140 | 1.0 | 0.0 | 1.0 |
| LKAKANBA_141 | 1.0 | 0.0 | 1.0 |
| LKAKANBA_142 | 1.0 | 0.0 | 1.0 |
| LKAKANBA_145 | 0.0 | 1.0 | 0.0 |
| LKAKANBA_146 | 0.0 | 1.0 | 0.0 |
| LKAKANBA_147 | 1.0 | 0.0 | 1.0 |
| LKAKANBA_148 | 0.0 | 1.0 | 0.0 |
| LKAKANBA_150 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)