Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 10 | 10.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| AIBBOFEN_29 | 19875 | 18724 | tufA | 0.0 | elongation factor Tu | 85.94 | 97.21 | AHM69299 |
| AIBBOFEN_28 | 29294 | 30799 | atpA | 0.0 | ATP synthase subunit alpha | 80.08 | 100.00 | ABD31377 |
| AIBBOFEN_34 | 12192 | 11323 | pdxS | 1.59e-152 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| AIBBOFEN_39 | 55755 | 56531 | CodY | 2.86e-128 | nutrient-responsive regulator | 81.85 | 100.00 | ACJ80679 |
| AIBBOFEN_39 | 55755 | 56531 | codY | 9.27e-125 | global regulator and isoleucine sensor | 80.69 | 100.00 | ASW39076 |
| AIBBOFEN_26 | 28546 | 29115 | ClpP | 4.14e-104 | part of proteolytic complex | 83.68 | 97.44 | BAB94595 |
| AIBBOFEN_8 | 38150 | 38836 | WalR | 6.73e-104 | transcriptional regulatory protein | 80.79 | 97.44 | EPH95667 |
| AIBBOFEN_18 | 50388 | 50780 | spxA1 | 1.79e-72 | redox-responsive transcription factor | 88.55 | 100.00 | AAF21893 |
| AIBBOFEN_18 | 50388 | 50780 | spx | 3.88e-67 | essential gene which is a thiol/oxidative stress sensor | 80.92 | 100.00 | BAB57159 |
| AIBBOFEN_53 | 35174 | 34932 | SpoVG | 5.97e-40 | RNA-binding protein | 82.72 | 79.41 | AAT02994 |
| AIBBOFEN_46 | 2984 | 3178 | CspD | 3.88e-30 | cold shock protein | 81.54 | 98.48 | CAC99957 |
| AIBBOFEN_46 | 2984 | 3181 | CspB | 2.61e-29 | cold shock protein | 80.30 | 100.00 | CAD00094 |
| AIBBOFEN_59 | 1197 | 1003 | CspA | 2.61e-29 | cold shock protein | 80.00 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| AIBBOFEN_1 | 0.0 | 1.0 | 0.0 |
| AIBBOFEN_2 | 0.0 | 1.0 | 0.0 |
| AIBBOFEN_3 | 0.0 | 1.0 | 0.0 |
| AIBBOFEN_4 | 0.0 | 1.0 | 0.0 |
| AIBBOFEN_5 | 0.0 | 1.0 | 0.0 |
| AIBBOFEN_6 | 0.0 | 1.0 | 0.0 |
| AIBBOFEN_7 | 0.0 | 1.0 | 0.0 |
| AIBBOFEN_8 | 0.0 | 1.0 | 0.0 |
| AIBBOFEN_9 | 0.0 | 1.0 | 0.0 |
| AIBBOFEN_10 | 0.0 | 1.0 | 0.0 |
| AIBBOFEN_11 | 0.0 | 1.0 | 0.0 |
| AIBBOFEN_12 | 0.0 | 1.0 | 0.0 |
| AIBBOFEN_13 | 0.0 | 1.0 | 0.0 |
| AIBBOFEN_14 | 0.0 | 1.0 | 0.0 |
| AIBBOFEN_15 | 0.0 | 1.0 | 0.0 |
| AIBBOFEN_16 | 1.0 | 0.0 | 1.0 |
| AIBBOFEN_17 | 0.0 | 1.0 | 0.0 |
| AIBBOFEN_18 | 0.0 | 1.0 | 0.0 |
| AIBBOFEN_19 | 0.0 | 1.0 | 0.0 |
| AIBBOFEN_20 | 0.0 | 1.0 | 0.0 |
| AIBBOFEN_21 | 0.0 | 1.0 | 0.0 |
| AIBBOFEN_22 | 0.0 | 1.0 | 0.0 |
| AIBBOFEN_23 | 0.0 | 1.0 | 0.0 |
| AIBBOFEN_24 | 0.0 | 1.0 | 0.0 |
| AIBBOFEN_25 | 1.0 | 0.0 | 1.0 |
| AIBBOFEN_26 | 0.0 | 1.0 | 0.0 |
| AIBBOFEN_27 | 0.0 | 1.0 | 0.0 |
| AIBBOFEN_28 | 0.0 | 1.0 | 0.0 |
| AIBBOFEN_29 | 0.0 | 1.0 | 0.0 |
| AIBBOFEN_30 | 0.0 | 1.0 | 0.0 |
| AIBBOFEN_32 | 0.0 | 1.0 | 0.0 |
| AIBBOFEN_33 | 0.0 | 1.0 | 0.0 |
| AIBBOFEN_34 | 0.0 | 1.0 | 0.0 |
| AIBBOFEN_35 | 0.0 | 1.0 | 0.0 |
| AIBBOFEN_36 | 0.0 | 1.0 | 0.0 |
| AIBBOFEN_37 | 0.0 | 1.0 | 0.0 |
| AIBBOFEN_38 | 0.0 | 1.0 | 0.0 |
| AIBBOFEN_39 | 0.0 | 1.0 | 0.0 |
| AIBBOFEN_40 | 0.0 | 1.0 | 0.0 |
| AIBBOFEN_41 | 0.0 | 1.0 | 0.0 |
| AIBBOFEN_42 | 0.0 | 1.0 | 0.0 |
| AIBBOFEN_43 | 0.0 | 1.0 | 0.0 |
| AIBBOFEN_44 | 1.0 | 0.0 | 1.0 |
| AIBBOFEN_45 | 0.0 | 1.0 | 0.0 |
| AIBBOFEN_46 | 0.0 | 1.0 | 0.0 |
| AIBBOFEN_47 | 0.0 | 1.0 | 0.0 |
| AIBBOFEN_48 | 0.0 | 1.0 | 0.0 |
| AIBBOFEN_49 | 1.0 | 0.0 | 1.0 |
| AIBBOFEN_50 | 0.0 | 1.0 | 0.0 |
| AIBBOFEN_51 | 0.0 | 1.0 | 0.0 |
| AIBBOFEN_52 | 0.0 | 1.0 | 0.0 |
| AIBBOFEN_53 | 0.0 | 1.0 | 0.0 |
| AIBBOFEN_54 | 1.0 | 0.0 | 1.0 |
| AIBBOFEN_55 | 0.0 | 1.0 | 0.0 |
| AIBBOFEN_57 | 0.0 | 1.0 | 0.0 |
| AIBBOFEN_58 | 0.0 | 1.0 | 0.0 |
| AIBBOFEN_59 | 0.0 | 1.0 | 0.0 |
| AIBBOFEN_60 | 0.0 | 1.0 | 0.0 |
| AIBBOFEN_61 | 0.0 | 1.0 | 0.0 |
| AIBBOFEN_62 | 0.0 | 1.0 | 0.0 |
| AIBBOFEN_63 | 1.0 | 0.0 | 1.0 |
| AIBBOFEN_64 | 1.0 | 0.0 | 1.0 |
| AIBBOFEN_65 | 0.0 | 1.0 | 0.0 |
| AIBBOFEN_66 | 0.0 | 1.0 | 0.0 |
| AIBBOFEN_67 | 0.0 | 1.0 | 0.0 |
| AIBBOFEN_68 | 0.0 | 1.0 | 0.0 |
| AIBBOFEN_69 | 0.0 | 1.0 | 0.0 |
| AIBBOFEN_70 | 0.0 | 1.0 | 0.0 |
| AIBBOFEN_71 | 0.0 | 1.0 | 0.0 |
| AIBBOFEN_72 | 0.0 | 1.0 | 0.0 |
| AIBBOFEN_73 | 0.0 | 1.0 | 0.0 |
| AIBBOFEN_75 | 0.0 | 1.0 | 0.0 |
| AIBBOFEN_76 | 0.0 | 1.0 | 0.0 |
| AIBBOFEN_77 | 1.0 | 0.0 | 1.0 |
| AIBBOFEN_78 | 0.0 | 1.0 | 0.0 |
| AIBBOFEN_79 | 0.0 | 1.0 | 0.0 |
| AIBBOFEN_80 | 0.0 | 1.0 | 0.0 |
| AIBBOFEN_81 | 0.0 | 1.0 | 0.0 |
| AIBBOFEN_82 | 0.0 | 1.0 | 0.0 |
| AIBBOFEN_83 | 0.0 | 1.0 | 0.0 |
| AIBBOFEN_84 | 1.0 | 0.0 | 1.0 |
| AIBBOFEN_86 | 1.0 | 0.0 | 1.0 |
| AIBBOFEN_87 | 0.0 | 1.0 | 0.0 |
| AIBBOFEN_88 | 0.0 | 1.0 | 0.0 |
| AIBBOFEN_89 | 0.0 | 1.0 | 0.0 |
| AIBBOFEN_90 | 1.0 | 0.0 | 1.0 |
| AIBBOFEN_91 | 1.0 | 0.0 | 1.0 |
| AIBBOFEN_93 | 0.0 | 1.0 | 0.0 |
| AIBBOFEN_94 | 1.0 | 0.0 | 1.0 |
| AIBBOFEN_95 | 1.0 | 0.0 | 1.0 |
| AIBBOFEN_96 | 0.0 | 1.0 | 0.0 |
| AIBBOFEN_97 | 1.0 | 0.0 | 1.0 |
| AIBBOFEN_98 | 0.0 | 1.0 | 0.0 |
| AIBBOFEN_99 | 1.0 | 0.0 | 1.0 |
| AIBBOFEN_100 | 1.0 | 0.0 | 1.0 |
| AIBBOFEN_101 | 0.0 | 1.0 | 0.0 |
| AIBBOFEN_102 | 0.0 | 1.0 | 0.0 |
| AIBBOFEN_103 | 0.0 | 1.0 | 0.0 |
| AIBBOFEN_104 | 1.0 | 0.0 | 1.0 |
| AIBBOFEN_105 | 1.0 | 0.0 | 1.0 |
| AIBBOFEN_106 | 0.0 | 1.0 | 0.0 |
| AIBBOFEN_107 | 0.0 | 1.0 | 0.0 |
| AIBBOFEN_108 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)