Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 8 | 8.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| ENGLCLCE_56 | 31899 | 33050 | tufA | 0.0 | elongation factor Tu | 86.46 | 97.21 | AHM69299 |
| ENGLCLCE_65 | 4469 | 5338 | pdxS | 1.12e-152 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| ENGLCLCE_89 | 5861 | 6637 | CodY | 1.29e-127 | nutrient-responsive regulator | 81.47 | 100.00 | ACJ80679 |
| ENGLCLCE_89 | 5861 | 6637 | codY | 3.14e-124 | global regulator and isoleucine sensor | 80.31 | 100.00 | ASW39076 |
| ENGLCLCE_48 | 7362 | 6793 | ClpP | 3.57e-104 | part of proteolytic complex | 83.68 | 97.44 | BAB94595 |
| ENGLCLCE_116 | 8813 | 8421 | spxA1 | 1.12e-73 | redox-responsive transcription factor | 88.55 | 100.00 | AAF21893 |
| ENGLCLCE_116 | 8813 | 8421 | spx | 2.41e-68 | essential gene which is a thiol/oxidative stress sensor | 80.92 | 100.00 | BAB57159 |
| ENGLCLCE_5 | 32466 | 32224 | SpoVG | 1.93e-39 | RNA-binding protein | 82.72 | 79.41 | AAT02994 |
| ENGLCLCE_170 | 478 | 281 | CspA | 1.66e-35 | cold shock protein | 86.36 | 100.00 | CAA62903 |
| ENGLCLCE_170 | 478 | 284 | CspR | 7.45e-32 | cold shock protein | 81.54 | 98.48 | AAO82613 |
| ENGLCLCE_102 | 27738 | 27932 | CspD | 8.74e-30 | cold shock protein | 81.54 | 98.48 | CAC99957 |
| ENGLCLCE_102 | 27738 | 27935 | CspB | 5.88e-29 | cold shock protein | 80.30 | 100.00 | CAD00094 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| ENGLCLCE_1 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_2 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_3 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_4 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_5 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_6 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_7 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_11 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_12 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_13 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_14 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_15 | 1.0 | 0.0 | 1.0 |
| ENGLCLCE_16 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_17 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_18 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_20 | 1.0 | 0.0 | 1.0 |
| ENGLCLCE_21 | 1.0 | 0.0 | 1.0 |
| ENGLCLCE_22 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_23 | 1.0 | 0.0 | 1.0 |
| ENGLCLCE_24 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_25 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_26 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_27 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_28 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_29 | 1.0 | 0.0 | 1.0 |
| ENGLCLCE_30 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_31 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_32 | 1.0 | 0.0 | 1.0 |
| ENGLCLCE_33 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_34 | 1.0 | 0.0 | 1.0 |
| ENGLCLCE_35 | 1.0 | 0.0 | 1.0 |
| ENGLCLCE_36 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_37 | 1.0 | 0.0 | 1.0 |
| ENGLCLCE_38 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_39 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_40 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_41 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_43 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_44 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_45 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_47 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_48 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_49 | 1.0 | 0.0 | 1.0 |
| ENGLCLCE_50 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_51 | 1.0 | 0.0 | 1.0 |
| ENGLCLCE_52 | 1.0 | 0.0 | 1.0 |
| ENGLCLCE_53 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_54 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_55 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_56 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_57 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_58 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_59 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_60 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_61 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_62 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_63 | 1.0 | 0.0 | 1.0 |
| ENGLCLCE_64 | 1.0 | 0.0 | 1.0 |
| ENGLCLCE_65 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_66 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_67 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_68 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_69 | 1.0 | 0.0 | 1.0 |
| ENGLCLCE_70 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_71 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_72 | 1.0 | 0.0 | 1.0 |
| ENGLCLCE_73 | 1.0 | 0.0 | 1.0 |
| ENGLCLCE_74 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_75 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_76 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_77 | 1.0 | 0.0 | 1.0 |
| ENGLCLCE_78 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_79 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_80 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_81 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_82 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_83 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_84 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_85 | 1.0 | 0.0 | 1.0 |
| ENGLCLCE_86 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_87 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_88 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_89 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_90 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_91 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_92 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_93 | 1.0 | 0.0 | 1.0 |
| ENGLCLCE_94 | 1.0 | 0.0 | 1.0 |
| ENGLCLCE_95 | 1.0 | 0.0 | 1.0 |
| ENGLCLCE_97 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_98 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_100 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_101 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_102 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_103 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_104 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_105 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_106 | 1.0 | 0.0 | 1.0 |
| ENGLCLCE_107 | 1.0 | 0.0 | 1.0 |
| ENGLCLCE_109 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_110 | 1.0 | 0.0 | 1.0 |
| ENGLCLCE_111 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_113 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_114 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_115 | 1.0 | 0.0 | 1.0 |
| ENGLCLCE_116 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_117 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_118 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_119 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_120 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_121 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_122 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_123 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_124 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_125 | 1.0 | 0.0 | 1.0 |
| ENGLCLCE_127 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_128 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_129 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_130 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_131 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_132 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_134 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_135 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_136 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_137 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_138 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_139 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_140 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_141 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_142 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_143 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_144 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_145 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_146 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_147 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_148 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_149 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_150 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_151 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_152 | 1.0 | 0.0 | 1.0 |
| ENGLCLCE_153 | 1.0 | 0.0 | 1.0 |
| ENGLCLCE_154 | 1.0 | 0.0 | 1.0 |
| ENGLCLCE_155 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_157 | 1.0 | 0.0 | 1.0 |
| ENGLCLCE_158 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_159 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_160 | 1.0 | 0.0 | 1.0 |
| ENGLCLCE_162 | 1.0 | 0.0 | 1.0 |
| ENGLCLCE_163 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_164 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_165 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_166 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_167 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_168 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_171 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_172 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_173 | 1.0 | 0.0 | 1.0 |
| ENGLCLCE_175 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_176 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_177 | 1.0 | 0.0 | 1.0 |
| ENGLCLCE_178 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_180 | 1.0 | 0.0 | 1.0 |
| ENGLCLCE_181 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_184 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_186 | 1.0 | 0.0 | 1.0 |
| ENGLCLCE_187 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_188 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_189 | 1.0 | 0.0 | 1.0 |
| ENGLCLCE_190 | 1.0 | 0.0 | 1.0 |
| ENGLCLCE_191 | 1.0 | 0.0 | 1.0 |
| ENGLCLCE_192 | 0.0 | 1.0 | 0.0 |
| ENGLCLCE_194 | 1.0 | 0.0 | 1.0 |
| ENGLCLCE_196 | 1.0 | 0.0 | 1.0 |
| ENGLCLCE_197 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| ENGLCLCE_2 | 1630 | 27586 | False | Siphoviridae | VOG0181, VOG7438, VOG1047, VOG0021, VOG0026, VOG1146, VOG1298, VOG6888, VOG4473, VOG6581, VOG7462, VOG4609, VOG0327, VOG4548, VOG4673, VOG8909, VOG8226, VOG4556, VOG4573, VOG4553, VOG7168, VOG0562, VOG8954, VOG0704, VOG4557 |
Phigaro v2.4.0 (Database: Jan. 2024 release)