Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 8 | 8.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| INOCIFIG_71 | 13070 | 14221 | tufA | 0.0 | elongation factor Tu | 86.46 | 97.21 | AHM69299 |
| INOCIFIG_27 | 4469 | 5338 | pdxS | 1.12e-152 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| INOCIFIG_57 | 26411 | 25635 | CodY | 4.31e-128 | nutrient-responsive regulator | 81.47 | 100.00 | ACJ80679 |
| INOCIFIG_57 | 26411 | 25635 | codY | 1.05e-124 | global regulator and isoleucine sensor | 80.31 | 100.00 | ASW39076 |
| INOCIFIG_69 | 8845 | 8276 | ClpP | 2.40e-104 | part of proteolytic complex | 83.68 | 97.44 | BAB94595 |
| INOCIFIG_47 | 6457 | 6849 | spxA1 | 1.13e-73 | redox-responsive transcription factor | 88.55 | 100.00 | AAF21893 |
| INOCIFIG_47 | 6457 | 6849 | spx | 2.44e-68 | essential gene which is a thiol/oxidative stress sensor | 80.92 | 100.00 | BAB57159 |
| INOCIFIG_60 | 17785 | 18027 | SpoVG | 1.91e-39 | RNA-binding protein | 82.72 | 79.41 | AAT02994 |
| INOCIFIG_125 | 570 | 373 | CspA | 7.64e-32 | cold shock protein | 86.36 | 100.00 | CAA62903 |
| INOCIFIG_6 | 15354 | 15160 | CspD | 6.94e-30 | cold shock protein | 81.54 | 98.48 | CAC99957 |
| INOCIFIG_6 | 15354 | 15157 | CspB | 4.67e-29 | cold shock protein | 80.30 | 100.00 | CAD00094 |
| INOCIFIG_125 | 570 | 376 | CspR | 1.42e-28 | cold shock protein | 81.54 | 98.48 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| INOCIFIG_1 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_2 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_3 | 1.0 | 0.0 | 1.0 |
| INOCIFIG_4 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_6 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_7 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_8 | 1.0 | 0.0 | 1.0 |
| INOCIFIG_9 | 1.0 | 0.0 | 1.0 |
| INOCIFIG_10 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_11 | 1.0 | 0.0 | 1.0 |
| INOCIFIG_12 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_13 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_14 | 1.0 | 0.0 | 1.0 |
| INOCIFIG_15 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_16 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_17 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_18 | 1.0 | 0.0 | 1.0 |
| INOCIFIG_20 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_21 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_22 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_23 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_24 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_25 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_26 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_27 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_28 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_29 | 1.0 | 0.0 | 1.0 |
| INOCIFIG_30 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_31 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_32 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_33 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_34 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_35 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_36 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_37 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_38 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_39 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_40 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_41 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_42 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_43 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_44 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_45 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_46 | 1.0 | 0.0 | 1.0 |
| INOCIFIG_47 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_48 | 1.0 | 0.0 | 1.0 |
| INOCIFIG_49 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_51 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_52 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_53 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_54 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_55 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_56 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_57 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_58 | 1.0 | 0.0 | 1.0 |
| INOCIFIG_59 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_60 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_61 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_62 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_63 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_64 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_65 | 1.0 | 0.0 | 1.0 |
| INOCIFIG_66 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_67 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_68 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_69 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_70 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_71 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_72 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_73 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_74 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_75 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_76 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_77 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_78 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_79 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_81 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_82 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_83 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_84 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_85 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_86 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_87 | 1.0 | 0.0 | 1.0 |
| INOCIFIG_88 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_89 | 1.0 | 0.0 | 1.0 |
| INOCIFIG_91 | 1.0 | 0.0 | 1.0 |
| INOCIFIG_92 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_93 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_94 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_95 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_96 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_97 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_99 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_100 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_101 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_102 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_103 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_105 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_106 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_107 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_108 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_109 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_110 | 1.0 | 0.0 | 1.0 |
| INOCIFIG_111 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_112 | 1.0 | 0.0 | 1.0 |
| INOCIFIG_113 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_114 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_115 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_116 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_118 | 1.0 | 0.0 | 1.0 |
| INOCIFIG_119 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_121 | 1.0 | 0.0 | 1.0 |
| INOCIFIG_122 | 1.0 | 0.0 | 1.0 |
| INOCIFIG_123 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_125 | 1.0 | 0.0 | 1.0 |
| INOCIFIG_126 | 1.0 | 0.0 | 1.0 |
| INOCIFIG_128 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_129 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_130 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_131 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_132 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_133 | 1.0 | 0.0 | 1.0 |
| INOCIFIG_134 | 1.0 | 0.0 | 1.0 |
| INOCIFIG_136 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_137 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_139 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_140 | 1.0 | 0.0 | 1.0 |
| INOCIFIG_141 | 1.0 | 0.0 | 1.0 |
| INOCIFIG_142 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_143 | 1.0 | 0.0 | 1.0 |
| INOCIFIG_144 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_145 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_146 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_147 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_149 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_150 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_151 | 1.0 | 0.0 | 1.0 |
| INOCIFIG_152 | 1.0 | 0.0 | 1.0 |
| INOCIFIG_153 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_154 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_155 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_156 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_157 | 1.0 | 0.0 | 1.0 |
| INOCIFIG_159 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_160 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_161 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_162 | 1.0 | 0.0 | 1.0 |
| INOCIFIG_163 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_164 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_165 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_166 | 1.0 | 0.0 | 1.0 |
| INOCIFIG_168 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_169 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_170 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_171 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_172 | 1.0 | 0.0 | 1.0 |
| INOCIFIG_174 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_175 | 1.0 | 0.0 | 1.0 |
| INOCIFIG_176 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_177 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_178 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_179 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_180 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_181 | 1.0 | 0.0 | 1.0 |
| INOCIFIG_182 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_183 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_185 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_186 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_188 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_189 | 1.0 | 0.0 | 1.0 |
| INOCIFIG_190 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_191 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_192 | 1.0 | 0.0 | 1.0 |
| INOCIFIG_194 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_195 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_197 | 0.0 | 1.0 | 0.0 |
| INOCIFIG_201 | 1.0 | 0.0 | 1.0 |
| INOCIFIG_202 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| INOCIFIG_14 | 6420 | 16163 | False | Siphoviridae | VOG4552, VOG8241, VOG3549, VOG1878, VOG1879, VOG4600, VOG1309, VOG4799, VOG0189, VOG9996, VOG0397, VOG0536, VOG0195, VOG6440 |
| INOCIFIG_14 | 19977 | 47725 | False | Siphoviridae | VOG1422, VOG0198, VOG3412, VOG0796, VOG10227, VOG0691, VOG0692, VOG1183, VOG1183, VOG9317, VOG4572, VOG5007, VOG0695, VOG0696, VOG0697, VOG0698, VOG7238, VOG10044, VOG0701, VOG3379, VOG4605, VOG10904, VOG4599, VOG4763, VOG3498, VOG4052, VOG4918, VOG0703 |
Phigaro v2.4.0 (Database: Jan. 2024 release)