Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 1 | 4 | 5.74 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OAGEKLHO_19 | 108077 | 108922 | Erm(34) | ARO:3000600 | Erm(34) | 98.58 | 100.00 | AY234334.1 |
| OAGEKLHO_58 | 37486 | 38256 | ANT(4')-Ib | ARO:3003905 | ANT(4')-Ib | 94.14 | 100.00 | EF540343.1 |
| OAGEKLHO_31 | 32670 | 33722 | clbC | ARO:3002816 | clbC | 97.14 | 100.00 | AP006627.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| OAGEKLHO_19 | 108077 | 108922 | erm(34) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 97.87 | 100.00 | AY234334 |
| OAGEKLHO_58 | 37486 | 38256 | ant(4')-Ib | Amikacin, Tobramycin, Isepamicin, Dibekacin | 94.16 | 100.00 | AJ506108 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OAGEKLHO_19 | 108080 | 108922 | erm(34) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(34) | BLASTX | 98.58 | 100.00 | WP_063844504.1 |
| OAGEKLHO_31 | 32673 | 33722 | clbB | 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbB | BLASTX | 97.14 | 100.00 | WP_011245929.1 |
| OAGEKLHO_58 | 34170 | 35072 | blaBCL | BCL family class A beta-lactamase | BLASTX | 96.68 | 100.00 | WP_065825670.1 |
| OAGEKLHO_58 | 37489 | 38256 | aadD2 | aminoglycoside O-nucleotidyltransferase ANT(4')-Ib | BLASTX | 94.14 | 100.00 | WP_035202393.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| OAGEKLHO_23 | 23068 | 23718 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 96.77 | 100.00 | WP_011247375 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| OAGEKLHO_8 | 37365 | 36223 | tufA | 0.0 | elongation factor Tu | 87.14 | 96.19 | AHM69299 |
| OAGEKLHO_39 | 36156 | 36398 | SpoVG | 1.70e-37 | RNA-binding protein | 81.48 | 79.41 | AAT02994 |
| OAGEKLHO_65 | 21362 | 21165 | CspA | 4.32e-31 | cold shock protein | 86.36 | 100.00 | CAA62903 |
| OAGEKLHO_15 | 25211 | 25399 | CspB | 2.18e-25 | cold shock protein | 82.54 | 95.45 | CAD00094 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| OAGEKLHO_1 | 0.0 | 1.0 | 0.0 |
| OAGEKLHO_2 | 0.0 | 1.0 | 0.0 |
| OAGEKLHO_3 | 0.0 | 1.0 | 0.0 |
| OAGEKLHO_4 | 0.0 | 1.0 | 0.0 |
| OAGEKLHO_5 | 0.0 | 1.0 | 0.0 |
| OAGEKLHO_6 | 0.0 | 1.0 | 0.0 |
| OAGEKLHO_7 | 0.0 | 1.0 | 0.0 |
| OAGEKLHO_8 | 0.0 | 1.0 | 0.0 |
| OAGEKLHO_9 | 0.0 | 1.0 | 0.0 |
| OAGEKLHO_10 | 0.0 | 1.0 | 0.0 |
| OAGEKLHO_11 | 0.0 | 1.0 | 0.0 |
| OAGEKLHO_12 | 0.0 | 1.0 | 0.0 |
| OAGEKLHO_13 | 0.0 | 1.0 | 0.0 |
| OAGEKLHO_15 | 0.0 | 1.0 | 0.0 |
| OAGEKLHO_16 | 1.0 | 0.0 | 1.0 |
| OAGEKLHO_17 | 0.0 | 1.0 | 0.0 |
| OAGEKLHO_18 | 0.0 | 1.0 | 0.0 |
| OAGEKLHO_19 | 0.0 | 1.0 | 0.0 |
| OAGEKLHO_20 | 0.0 | 1.0 | 0.0 |
| OAGEKLHO_21 | 0.0 | 1.0 | 0.0 |
| OAGEKLHO_22 | 0.0 | 1.0 | 0.0 |
| OAGEKLHO_23 | 0.0 | 1.0 | 0.0 |
| OAGEKLHO_24 | 0.0 | 1.0 | 0.0 |
| OAGEKLHO_25 | 0.0 | 1.0 | 0.0 |
| OAGEKLHO_27 | 0.0 | 1.0 | 0.0 |
| OAGEKLHO_29 | 0.0 | 1.0 | 0.0 |
| OAGEKLHO_30 | 0.0 | 1.0 | 0.0 |
| OAGEKLHO_31 | 0.0 | 1.0 | 0.0 |
| OAGEKLHO_32 | 0.0 | 1.0 | 0.0 |
| OAGEKLHO_33 | 0.0 | 1.0 | 0.0 |
| OAGEKLHO_34 | 0.0 | 1.0 | 0.0 |
| OAGEKLHO_35 | 0.0 | 1.0 | 0.0 |
| OAGEKLHO_36 | 0.0 | 1.0 | 0.0 |
| OAGEKLHO_38 | 0.0 | 1.0 | 0.0 |
| OAGEKLHO_39 | 0.0 | 1.0 | 0.0 |
| OAGEKLHO_40 | 1.0 | 0.0 | 1.0 |
| OAGEKLHO_41 | 0.0 | 1.0 | 0.0 |
| OAGEKLHO_42 | 0.0 | 1.0 | 0.0 |
| OAGEKLHO_43 | 0.0 | 1.0 | 0.0 |
| OAGEKLHO_44 | 0.0 | 1.0 | 0.0 |
| OAGEKLHO_45 | 1.0 | 0.0 | 1.0 |
| OAGEKLHO_46 | 0.0 | 1.0 | 0.0 |
| OAGEKLHO_47 | 0.0 | 1.0 | 0.0 |
| OAGEKLHO_48 | 0.0 | 1.0 | 0.0 |
| OAGEKLHO_49 | 0.0 | 1.0 | 0.0 |
| OAGEKLHO_50 | 1.0 | 0.0 | 1.0 |
| OAGEKLHO_51 | 0.0 | 1.0 | 0.0 |
| OAGEKLHO_52 | 1.0 | 0.0 | 1.0 |
| OAGEKLHO_53 | 0.0 | 1.0 | 0.0 |
| OAGEKLHO_54 | 0.0 | 1.0 | 0.0 |
| OAGEKLHO_55 | 0.0 | 1.0 | 0.0 |
| OAGEKLHO_56 | 0.0 | 1.0 | 0.0 |
| OAGEKLHO_57 | 0.0 | 1.0 | 0.0 |
| OAGEKLHO_58 | 0.0 | 1.0 | 0.0 |
| OAGEKLHO_60 | 0.0 | 1.0 | 0.0 |
| OAGEKLHO_61 | 0.0 | 1.0 | 0.0 |
| OAGEKLHO_62 | 0.0 | 1.0 | 0.0 |
| OAGEKLHO_63 | 1.0 | 0.0 | 1.0 |
| OAGEKLHO_65 | 0.0 | 1.0 | 0.0 |
| OAGEKLHO_66 | 1.0 | 0.0 | 1.0 |
| OAGEKLHO_68 | 1.0 | 0.0 | 1.0 |
| OAGEKLHO_69 | 1.0 | 0.0 | 1.0 |
| OAGEKLHO_70 | 1.0 | 0.0 | 1.0 |
| OAGEKLHO_71 | 0.0 | 1.0 | 0.0 |
| OAGEKLHO_72 | 0.0 | 1.0 | 0.0 |
| OAGEKLHO_74 | 0.0 | 1.0 | 0.0 |
| OAGEKLHO_75 | 1.0 | 0.0 | 1.0 |
| OAGEKLHO_76 | 1.0 | 0.0 | 1.0 |
| OAGEKLHO_78 | 0.0 | 1.0 | 0.0 |
| OAGEKLHO_79 | 0.0 | 1.0 | 0.0 |
| OAGEKLHO_80 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| OAGEKLHO_27 | 79199 | 109354 | False | Siphoviridae | VOG1936, VOG0535, VOG6931, VOG6414, VOG0468, VOG5353, VOG8520, VOG4602, VOG1521, VOG0866, VOG6116, VOG0018, VOG0992, VOG0641, VOG4619, VOG4660, VOG0801, VOG4910, VOG0541, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG7168, VOG4553, VOG4568, VOG4556, VOG5051, VOG4544, VOG4581, VOG4841, VOG10137 |
Phigaro v2.4.0 (Database: Jan. 2024 release)