Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 8 | 8.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| MHPCPCJM_57 | 32042 | 33193 | tufA | 0.0 | elongation factor Tu | 86.20 | 97.21 | AHM69299 |
| MHPCPCJM_61 | 4741 | 5610 | pdxS | 1.13e-152 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| MHPCPCJM_20 | 55852 | 56628 | CodY | 2.19e-127 | nutrient-responsive regulator | 81.47 | 100.00 | ACJ80679 |
| MHPCPCJM_20 | 55852 | 56628 | codY | 5.32e-124 | global regulator and isoleucine sensor | 80.31 | 100.00 | ASW39076 |
| MHPCPCJM_5 | 104766 | 105335 | ClpP | 9.82e-104 | part of proteolytic complex | 83.68 | 97.44 | BAB94595 |
| MHPCPCJM_5 | 11893 | 11501 | spxA1 | 1.72e-72 | redox-responsive transcription factor | 88.55 | 100.00 | AAF21893 |
| MHPCPCJM_5 | 11893 | 11501 | spx | 3.71e-67 | essential gene which is a thiol/oxidative stress sensor | 80.92 | 100.00 | BAB57159 |
| MHPCPCJM_68 | 1313 | 1071 | SpoVG | 7.25e-40 | RNA-binding protein | 82.72 | 79.41 | AAT02994 |
| MHPCPCJM_98 | 6631 | 6828 | CspA | 9.68e-32 | cold shock protein | 86.36 | 100.00 | CAA62903 |
| MHPCPCJM_48 | 8095 | 8289 | CspD | 2.75e-30 | cold shock protein | 81.54 | 98.48 | CAC99957 |
| MHPCPCJM_48 | 8095 | 8292 | CspB | 1.85e-29 | cold shock protein | 80.30 | 100.00 | CAD00094 |
| MHPCPCJM_98 | 6631 | 6825 | CspR | 1.79e-28 | cold shock protein | 81.54 | 98.48 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| MHPCPCJM_1 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_2 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_3 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_4 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_5 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_7 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_8 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_9 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_10 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_11 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_12 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_13 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_14 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_15 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_16 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_17 | 1.0 | 0.0 | 1.0 |
| MHPCPCJM_18 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_19 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_20 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_22 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_23 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_24 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_25 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_26 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_27 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_28 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_29 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_30 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_32 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_33 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_34 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_35 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_36 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_37 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_38 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_39 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_40 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_41 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_42 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_43 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_44 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_45 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_46 | 1.0 | 0.0 | 1.0 |
| MHPCPCJM_47 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_48 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_49 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_50 | 1.0 | 0.0 | 1.0 |
| MHPCPCJM_51 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_52 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_53 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_54 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_55 | 1.0 | 0.0 | 1.0 |
| MHPCPCJM_56 | 1.0 | 0.0 | 1.0 |
| MHPCPCJM_57 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_58 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_59 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_60 | 1.0 | 0.0 | 1.0 |
| MHPCPCJM_61 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_62 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_63 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_64 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_65 | 1.0 | 0.0 | 1.0 |
| MHPCPCJM_66 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_67 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_68 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_69 | 1.0 | 0.0 | 1.0 |
| MHPCPCJM_70 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_71 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_72 | 1.0 | 0.0 | 1.0 |
| MHPCPCJM_73 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_74 | 1.0 | 0.0 | 1.0 |
| MHPCPCJM_75 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_76 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_77 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_78 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_79 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_80 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_81 | 1.0 | 0.0 | 1.0 |
| MHPCPCJM_82 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_83 | 1.0 | 0.0 | 1.0 |
| MHPCPCJM_84 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_85 | 1.0 | 0.0 | 1.0 |
| MHPCPCJM_86 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_87 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_88 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_89 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_90 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_91 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_92 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_94 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_95 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_96 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_97 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_98 | 1.0 | 0.0 | 1.0 |
| MHPCPCJM_99 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_100 | 1.0 | 0.0 | 1.0 |
| MHPCPCJM_101 | 1.0 | 0.0 | 1.0 |
| MHPCPCJM_102 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_103 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_104 | 1.0 | 0.0 | 1.0 |
| MHPCPCJM_106 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_107 | 1.0 | 0.0 | 1.0 |
| MHPCPCJM_108 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_110 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_111 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_112 | 1.0 | 0.0 | 1.0 |
| MHPCPCJM_113 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_114 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_116 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_117 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_118 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_119 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_120 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_121 | 1.0 | 0.0 | 1.0 |
| MHPCPCJM_123 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_124 | 1.0 | 0.0 | 1.0 |
| MHPCPCJM_125 | 0.0 | 1.0 | 0.0 |
| MHPCPCJM_126 | 1.0 | 0.0 | 1.0 |
| MHPCPCJM_127 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| MHPCPCJM_10 | 4341 | 25920 | False | Myoviridae | VOG0083, VOG8580, VOG3390, VOG6373, VOG4845, VOG4691, VOG4550, VOG0573, VOG1348, VOG1433, VOG1956, VOG6163, VOG4699, VOG1352, VOG1883, VOG1881, VOG1353, VOG4710, VOG7226, VOG1942, VOG2779, VOG1915, VOG4564, VOG1912, VOG7407 |
Phigaro v2.4.0 (Database: Jan. 2024 release)