Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 8 | 8.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| IODFLDAP_25 | 42324 | 41173 | tufA | 0.0 | elongation factor Tu | 86.72 | 97.21 | AHM69299 |
| IODFLDAP_24 | 11015 | 10146 | pdxS | 1.14e-152 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| IODFLDAP_9 | 67579 | 66803 | CodY | 3.43e-127 | nutrient-responsive regulator | 81.47 | 100.00 | ACJ80679 |
| IODFLDAP_9 | 67579 | 66803 | codY | 8.31e-124 | global regulator and isoleucine sensor | 80.31 | 100.00 | ASW39076 |
| IODFLDAP_30 | 38858 | 39427 | ClpP | 4.31e-104 | part of proteolytic complex | 83.68 | 97.44 | BAB94595 |
| IODFLDAP_2 | 66751 | 66359 | spxA1 | 9.04e-73 | redox-responsive transcription factor | 88.55 | 100.00 | AAF21893 |
| IODFLDAP_2 | 66751 | 66359 | spx | 1.96e-67 | essential gene which is a thiol/oxidative stress sensor | 80.92 | 100.00 | BAB57159 |
| IODFLDAP_77 | 1115 | 873 | SpoVG | 7.10e-40 | RNA-binding protein | 82.72 | 79.41 | AAT02994 |
| IODFLDAP_43 | 6547 | 6744 | CspA | 7.44e-32 | cold shock protein | 86.36 | 100.00 | CAA62903 |
| IODFLDAP_66 | 14542 | 14348 | CspD | 4.42e-30 | cold shock protein | 81.54 | 98.48 | CAC99957 |
| IODFLDAP_66 | 14542 | 14345 | CspB | 2.97e-29 | cold shock protein | 80.30 | 100.00 | CAD00094 |
| IODFLDAP_43 | 6547 | 6741 | CspR | 1.38e-28 | cold shock protein | 81.54 | 98.48 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| IODFLDAP_1 | 0.0 | 1.0 | 0.0 |
| IODFLDAP_2 | 0.0 | 1.0 | 0.0 |
| IODFLDAP_3 | 0.0 | 1.0 | 0.0 |
| IODFLDAP_4 | 0.0 | 1.0 | 0.0 |
| IODFLDAP_5 | 0.0 | 1.0 | 0.0 |
| IODFLDAP_6 | 0.0 | 1.0 | 0.0 |
| IODFLDAP_7 | 0.0 | 1.0 | 0.0 |
| IODFLDAP_8 | 0.0 | 1.0 | 0.0 |
| IODFLDAP_9 | 0.0 | 1.0 | 0.0 |
| IODFLDAP_10 | 0.0 | 1.0 | 0.0 |
| IODFLDAP_11 | 0.0 | 1.0 | 0.0 |
| IODFLDAP_12 | 0.0 | 1.0 | 0.0 |
| IODFLDAP_13 | 0.0 | 1.0 | 0.0 |
| IODFLDAP_14 | 0.0 | 1.0 | 0.0 |
| IODFLDAP_15 | 0.0 | 1.0 | 0.0 |
| IODFLDAP_16 | 0.0 | 1.0 | 0.0 |
| IODFLDAP_17 | 0.0 | 1.0 | 0.0 |
| IODFLDAP_18 | 0.0 | 1.0 | 0.0 |
| IODFLDAP_19 | 0.0 | 1.0 | 0.0 |
| IODFLDAP_20 | 0.0 | 1.0 | 0.0 |
| IODFLDAP_21 | 0.0 | 1.0 | 0.0 |
| IODFLDAP_22 | 0.0 | 1.0 | 0.0 |
| IODFLDAP_24 | 0.0 | 1.0 | 0.0 |
| IODFLDAP_25 | 0.0 | 1.0 | 0.0 |
| IODFLDAP_26 | 0.0 | 1.0 | 0.0 |
| IODFLDAP_27 | 1.0 | 0.0 | 1.0 |
| IODFLDAP_28 | 0.0 | 1.0 | 0.0 |
| IODFLDAP_29 | 0.0 | 1.0 | 0.0 |
| IODFLDAP_30 | 0.0 | 1.0 | 0.0 |
| IODFLDAP_31 | 0.0 | 1.0 | 0.0 |
| IODFLDAP_32 | 0.0 | 1.0 | 0.0 |
| IODFLDAP_33 | 0.0 | 1.0 | 0.0 |
| IODFLDAP_34 | 0.0 | 1.0 | 0.0 |
| IODFLDAP_35 | 0.0 | 1.0 | 0.0 |
| IODFLDAP_36 | 0.0 | 1.0 | 0.0 |
| IODFLDAP_37 | 1.0 | 0.0 | 1.0 |
| IODFLDAP_38 | 0.0 | 1.0 | 0.0 |
| IODFLDAP_39 | 0.0 | 1.0 | 0.0 |
| IODFLDAP_40 | 0.0 | 1.0 | 0.0 |
| IODFLDAP_43 | 1.0 | 0.0 | 1.0 |
| IODFLDAP_44 | 0.0 | 1.0 | 0.0 |
| IODFLDAP_45 | 0.0 | 1.0 | 0.0 |
| IODFLDAP_46 | 0.0 | 1.0 | 0.0 |
| IODFLDAP_47 | 1.0 | 0.0 | 1.0 |
| IODFLDAP_49 | 0.0 | 1.0 | 0.0 |
| IODFLDAP_50 | 1.0 | 0.0 | 1.0 |
| IODFLDAP_51 | 0.0 | 1.0 | 0.0 |
| IODFLDAP_52 | 0.0 | 1.0 | 0.0 |
| IODFLDAP_53 | 0.0 | 1.0 | 0.0 |
| IODFLDAP_54 | 0.0 | 1.0 | 0.0 |
| IODFLDAP_55 | 1.0 | 0.0 | 1.0 |
| IODFLDAP_56 | 0.0 | 1.0 | 0.0 |
| IODFLDAP_57 | 0.0 | 1.0 | 0.0 |
| IODFLDAP_58 | 0.0 | 1.0 | 0.0 |
| IODFLDAP_60 | 0.0 | 1.0 | 0.0 |
| IODFLDAP_61 | 0.0 | 1.0 | 0.0 |
| IODFLDAP_62 | 1.0 | 0.0 | 1.0 |
| IODFLDAP_64 | 0.0 | 1.0 | 0.0 |
| IODFLDAP_65 | 0.0 | 1.0 | 0.0 |
| IODFLDAP_66 | 0.0 | 1.0 | 0.0 |
| IODFLDAP_67 | 1.0 | 0.0 | 1.0 |
| IODFLDAP_68 | 0.0 | 1.0 | 0.0 |
| IODFLDAP_69 | 1.0 | 0.0 | 1.0 |
| IODFLDAP_70 | 1.0 | 0.0 | 1.0 |
| IODFLDAP_72 | 0.0 | 1.0 | 0.0 |
| IODFLDAP_73 | 0.0 | 1.0 | 0.0 |
| IODFLDAP_74 | 0.0 | 1.0 | 0.0 |
| IODFLDAP_75 | 0.0 | 1.0 | 0.0 |
| IODFLDAP_76 | 1.0 | 0.0 | 1.0 |
| IODFLDAP_77 | 0.0 | 1.0 | 0.0 |
| IODFLDAP_78 | 0.0 | 1.0 | 0.0 |
| IODFLDAP_79 | 0.0 | 1.0 | 0.0 |
| IODFLDAP_80 | 0.0 | 1.0 | 0.0 |
| IODFLDAP_81 | 0.0 | 1.0 | 0.0 |
| IODFLDAP_82 | 0.0 | 1.0 | 0.0 |
| IODFLDAP_83 | 1.0 | 0.0 | 1.0 |
| IODFLDAP_84 | 0.0 | 1.0 | 0.0 |
| IODFLDAP_85 | 0.0 | 1.0 | 0.0 |
| IODFLDAP_87 | 1.0 | 0.0 | 1.0 |
| IODFLDAP_89 | 1.0 | 0.0 | 1.0 |
| IODFLDAP_90 | 0.0 | 1.0 | 0.0 |
| IODFLDAP_91 | 0.0 | 1.0 | 0.0 |
| IODFLDAP_92 | 0.0 | 1.0 | 0.0 |
| IODFLDAP_93 | 1.0 | 0.0 | 1.0 |
| IODFLDAP_94 | 0.0 | 1.0 | 0.0 |
| IODFLDAP_95 | 0.0 | 1.0 | 0.0 |
| IODFLDAP_96 | 1.0 | 0.0 | 1.0 |
| IODFLDAP_97 | 0.0 | 1.0 | 0.0 |
| IODFLDAP_98 | 1.0 | 0.0 | 1.0 |
| IODFLDAP_99 | 1.0 | 0.0 | 1.0 |
| IODFLDAP_100 | 0.0 | 1.0 | 0.0 |
| IODFLDAP_101 | 1.0 | 0.0 | 1.0 |
| IODFLDAP_102 | 0.0 | 1.0 | 0.0 |
| IODFLDAP_103 | 0.0 | 1.0 | 0.0 |
| IODFLDAP_106 | 0.0 | 1.0 | 0.0 |
| IODFLDAP_107 | 1.0 | 0.0 | 1.0 |
| IODFLDAP_108 | 0.0 | 1.0 | 0.0 |
| IODFLDAP_109 | 1.0 | 0.0 | 1.0 |
| IODFLDAP_110 | 1.0 | 0.0 | 1.0 |
| IODFLDAP_112 | 0.0 | 1.0 | 0.0 |
| IODFLDAP_113 | 1.0 | 0.0 | 1.0 |
| IODFLDAP_114 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)