Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 8 | 8.06 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HIDJNJAD_130 | 430 | 750 | qacC | quaternary ammonium compound efflux SMR transporter QacC | EXACTX | 100.00 | 100.00 | WP_001146389.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HIDJNJAD_23 | 42365 | 41214 | tufA | 0.0 | elongation factor Tu | 86.72 | 97.21 | AHM69299 |
| HIDJNJAD_108 | 10982 | 10113 | pdxS | 1.12e-152 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| HIDJNJAD_10 | 67723 | 66947 | CodY | 2.64e-128 | nutrient-responsive regulator | 81.85 | 100.00 | ACJ80679 |
| HIDJNJAD_10 | 67723 | 66947 | codY | 7.47e-125 | global regulator and isoleucine sensor | 80.69 | 100.00 | ASW39076 |
| HIDJNJAD_6 | 92652 | 92083 | ClpP | 5.61e-104 | part of proteolytic complex | 83.68 | 97.44 | BAB94595 |
| HIDJNJAD_52 | 11785 | 11393 | spxA1 | 4.91e-73 | redox-responsive transcription factor | 88.55 | 100.00 | AAF21893 |
| HIDJNJAD_52 | 11785 | 11393 | spx | 1.06e-67 | essential gene which is a thiol/oxidative stress sensor | 80.92 | 100.00 | BAB57159 |
| HIDJNJAD_83 | 4996 | 5238 | SpoVG | 2.38e-40 | RNA-binding protein | 82.72 | 79.41 | AAT02994 |
| HIDJNJAD_112 | 7920 | 8117 | CspA | 8.91e-32 | cold shock protein | 86.36 | 100.00 | CAA62903 |
| HIDJNJAD_60 | 16745 | 16551 | CspD | 1.19e-29 | cold shock protein | 81.54 | 98.48 | CAC99957 |
| HIDJNJAD_60 | 16745 | 16548 | CspB | 8.01e-29 | cold shock protein | 80.30 | 100.00 | CAD00094 |
| HIDJNJAD_112 | 7920 | 8114 | CspR | 1.65e-28 | cold shock protein | 81.54 | 98.48 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| HIDJNJAD_130 | 1345 | 2241 | rep21 | 897 / 999 | 99.89 | GQ900396 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HIDJNJAD_1 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_2 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_3 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_4 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_5 | 1.0 | 0.0 | 1.0 |
| HIDJNJAD_6 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_7 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_9 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_10 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_11 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_12 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_13 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_14 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_15 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_17 | 1.0 | 0.0 | 1.0 |
| HIDJNJAD_18 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_19 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_20 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_21 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_22 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_23 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_24 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_26 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_27 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_28 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_29 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_30 | 1.0 | 0.0 | 1.0 |
| HIDJNJAD_31 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_32 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_33 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_34 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_35 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_36 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_37 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_38 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_39 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_40 | 1.0 | 0.0 | 1.0 |
| HIDJNJAD_41 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_42 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_43 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_44 | 1.0 | 0.0 | 1.0 |
| HIDJNJAD_45 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_46 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_47 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_48 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_49 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_50 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_51 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_52 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_53 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_54 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_55 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_57 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_58 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_59 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_60 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_61 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_62 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_63 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_64 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_65 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_66 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_67 | 1.0 | 0.0 | 1.0 |
| HIDJNJAD_68 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_69 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_70 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_74 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_75 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_76 | 1.0 | 0.0 | 1.0 |
| HIDJNJAD_77 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_78 | 1.0 | 0.0 | 1.0 |
| HIDJNJAD_79 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_80 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_81 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_82 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_83 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_84 | 1.0 | 0.0 | 1.0 |
| HIDJNJAD_85 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_86 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_87 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_88 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_89 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_90 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_91 | 1.0 | 0.0 | 1.0 |
| HIDJNJAD_92 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_93 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_95 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_96 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_97 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_98 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_99 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_100 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_101 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_102 | 1.0 | 0.0 | 1.0 |
| HIDJNJAD_103 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_104 | 1.0 | 0.0 | 1.0 |
| HIDJNJAD_106 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_107 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_108 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_109 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_110 | 1.0 | 0.0 | 1.0 |
| HIDJNJAD_111 | 1.0 | 0.0 | 1.0 |
| HIDJNJAD_112 | 1.0 | 0.0 | 1.0 |
| HIDJNJAD_113 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_114 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_115 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_116 | 1.0 | 0.0 | 1.0 |
| HIDJNJAD_118 | 1.0 | 0.0 | 1.0 |
| HIDJNJAD_119 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_120 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_121 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_123 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_124 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_125 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_126 | 1.0 | 0.0 | 1.0 |
| HIDJNJAD_128 | 1.0 | 0.0 | 1.0 |
| HIDJNJAD_129 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_130 | 1.0 | 0.0 | 1.0 |
| HIDJNJAD_131 | 1.0 | 0.0 | 1.0 |
| HIDJNJAD_132 | 1.0 | 0.0 | 1.0 |
| HIDJNJAD_133 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_134 | 1.0 | 0.0 | 1.0 |
| HIDJNJAD_136 | 1.0 | 0.0 | 1.0 |
| HIDJNJAD_138 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_139 | 1.0 | 0.0 | 1.0 |
| HIDJNJAD_140 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_141 | 1.0 | 0.0 | 1.0 |
| HIDJNJAD_142 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_143 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_145 | 0.0 | 1.0 | 0.0 |
| HIDJNJAD_146 | 1.0 | 0.0 | 1.0 |
| HIDJNJAD_147 | 1.0 | 0.0 | 1.0 |
| HIDJNJAD_148 | 1.0 | 0.0 | 1.0 |
| HIDJNJAD_149 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HIDJNJAD_11 | 47773 | 78410 | False | Siphoviridae | VOG9546, VOG0703, VOG4918, VOG8197, VOG5008, VOG3498, VOG4763, VOG4599, VOG4605, VOG3379, VOG0701, VOG10044, VOG7238, VOG0698, VOG0697, VOG0696, VOG0695, VOG5007, VOG4572, VOG9317, VOG1183, VOG0692, VOG0691, VOG10227, VOG0796, VOG3412, VOG0198, VOG10904, VOG8445, VOG1422 |
| HIDJNJAD_11 | 84748 | 96020 | False | Siphoviridae | VOG0085, VOG9996, VOG0189, VOG4799, VOG1309, VOG4600, VOG1879, VOG1878, VOG3549, VOG8241, VOG4552, VOG11077, VOG4602 |
Phigaro v2.4.0 (Database: Jan. 2024 release)