Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 1 | 1.41 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LACDLEKP_2 | 240452 | 241357 | blaMUN-1 | MUN family extended-spectrum class A beta-lactamase MUN-1 | ALLELEX | 100.00 | 100.00 | WP_206340447.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LACDLEKP_30 | 750 | 2330 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 80.64 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LACDLEKP_1 | 0.0 | 1.0 | 0.0 |
| LACDLEKP_2 | 0.0 | 1.0 | 0.0 |
| LACDLEKP_3 | 0.0 | 1.0 | 0.0 |
| LACDLEKP_4 | 0.0 | 1.0 | 0.0 |
| LACDLEKP_5 | 0.0 | 1.0 | 0.0 |
| LACDLEKP_6 | 0.0 | 1.0 | 0.0 |
| LACDLEKP_7 | 0.0 | 1.0 | 0.0 |
| LACDLEKP_8 | 0.0 | 1.0 | 0.0 |
| LACDLEKP_9 | 0.0 | 1.0 | 0.0 |
| LACDLEKP_10 | 0.0 | 1.0 | 0.0 |
| LACDLEKP_11 | 0.0 | 1.0 | 0.0 |
| LACDLEKP_12 | 0.0 | 1.0 | 0.0 |
| LACDLEKP_13 | 0.0 | 1.0 | 0.0 |
| LACDLEKP_14 | 0.0 | 1.0 | 0.0 |
| LACDLEKP_15 | 0.0 | 1.0 | 0.0 |
| LACDLEKP_16 | 0.0 | 1.0 | 0.0 |
| LACDLEKP_17 | 0.0 | 1.0 | 0.0 |
| LACDLEKP_18 | 0.0 | 1.0 | 0.0 |
| LACDLEKP_19 | 0.0 | 1.0 | 0.0 |
| LACDLEKP_20 | 0.0 | 1.0 | 0.0 |
| LACDLEKP_21 | 0.0 | 1.0 | 0.0 |
| LACDLEKP_22 | 0.0 | 1.0 | 0.0 |
| LACDLEKP_23 | 0.0 | 1.0 | 0.0 |
| LACDLEKP_24 | 0.0 | 1.0 | 0.0 |
| LACDLEKP_25 | 0.0 | 1.0 | 0.0 |
| LACDLEKP_26 | 0.0 | 1.0 | 0.0 |
| LACDLEKP_27 | 0.0 | 1.0 | 0.0 |
| LACDLEKP_28 | 0.0 | 1.0 | 0.0 |
| LACDLEKP_29 | 0.0 | 1.0 | 0.0 |
| LACDLEKP_30 | 0.0 | 1.0 | 0.0 |
| LACDLEKP_31 | 0.0 | 1.0 | 0.0 |
| LACDLEKP_32 | 0.0 | 1.0 | 0.0 |
| LACDLEKP_33 | 0.0 | 1.0 | 0.0 |
| LACDLEKP_34 | 0.0 | 1.0 | 0.0 |
| LACDLEKP_35 | 1.0 | 0.0 | 1.0 |
| LACDLEKP_36 | 1.0 | 0.0 | 1.0 |
| LACDLEKP_37 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LACDLEKP_2 | 79651 | 86812 | False | Myoviridae | VOG11032, |
| LACDLEKP_7 | 94510 | 106501 | False | Unknown | VOG0572, |
| LACDLEKP_10 | 48046 | 60455 | False | Unknown | VOG0572, |
| LACDLEKP_10 | 162466 | 166407 | False | Unknown | VOG0226, |
Phigaro v2.4.0 (Database: Jan. 2024 release)