Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PNHPIJKH_2 | 147212 | 150775 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | ARO:3004480 | Bado_rpoB_RIF | 92.82 | 100.08 | NC_008618.1 |
| PNHPIJKH_34 | 715 | 1086 | Mycobacterium tuberculosis rpsL mutations conferring resistance to Streptomycin | ARO:3003395 | Mtub_rpsL_STR | 82.93 | 99.19 | NC_000962.3 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PNHPIJKH_1 | 0.0 | 1.0 | 0.0 |
| PNHPIJKH_2 | 0.0 | 1.0 | 0.0 |
| PNHPIJKH_3 | 0.0 | 1.0 | 0.0 |
| PNHPIJKH_4 | 0.0 | 1.0 | 0.0 |
| PNHPIJKH_5 | 0.0 | 1.0 | 0.0 |
| PNHPIJKH_6 | 0.0 | 1.0 | 0.0 |
| PNHPIJKH_7 | 0.0 | 1.0 | 0.0 |
| PNHPIJKH_8 | 0.0 | 1.0 | 0.0 |
| PNHPIJKH_9 | 0.0 | 1.0 | 0.0 |
| PNHPIJKH_10 | 0.0 | 1.0 | 0.0 |
| PNHPIJKH_11 | 0.0 | 1.0 | 0.0 |
| PNHPIJKH_12 | 0.0 | 1.0 | 0.0 |
| PNHPIJKH_13 | 0.0 | 1.0 | 0.0 |
| PNHPIJKH_14 | 0.0 | 1.0 | 0.0 |
| PNHPIJKH_15 | 0.0 | 1.0 | 0.0 |
| PNHPIJKH_16 | 0.0 | 1.0 | 0.0 |
| PNHPIJKH_17 | 0.0 | 1.0 | 0.0 |
| PNHPIJKH_18 | 0.0 | 1.0 | 0.0 |
| PNHPIJKH_19 | 0.0 | 1.0 | 0.0 |
| PNHPIJKH_20 | 0.0 | 1.0 | 0.0 |
| PNHPIJKH_21 | 1.0 | 0.0 | 1.0 |
| PNHPIJKH_22 | 0.0 | 1.0 | 0.0 |
| PNHPIJKH_23 | 0.0 | 1.0 | 0.0 |
| PNHPIJKH_24 | 1.0 | 0.0 | 1.0 |
| PNHPIJKH_25 | 0.0 | 1.0 | 0.0 |
| PNHPIJKH_26 | 0.0 | 1.0 | 0.0 |
| PNHPIJKH_27 | 0.0 | 1.0 | 0.0 |
| PNHPIJKH_28 | 0.0 | 1.0 | 0.0 |
| PNHPIJKH_29 | 0.0 | 1.0 | 0.0 |
| PNHPIJKH_30 | 0.0 | 1.0 | 0.0 |
| PNHPIJKH_31 | 0.0 | 1.0 | 0.0 |
| PNHPIJKH_32 | 1.0 | 0.0 | 1.0 |
| PNHPIJKH_33 | 0.0 | 1.0 | 0.0 |
| PNHPIJKH_34 | 0.0 | 1.0 | 0.0 |
| PNHPIJKH_35 | 0.0 | 1.0 | 0.0 |
| PNHPIJKH_36 | 0.0 | 1.0 | 0.0 |
| PNHPIJKH_37 | 0.0 | 1.0 | 0.0 |
| PNHPIJKH_38 | 1.0 | 0.0 | 1.0 |
| PNHPIJKH_39 | 0.0 | 1.0 | 0.0 |
| PNHPIJKH_40 | 0.0 | 1.0 | 0.0 |
| PNHPIJKH_41 | 0.0 | 1.0 | 0.0 |
| PNHPIJKH_42 | 0.0 | 1.0 | 0.0 |
| PNHPIJKH_43 | 1.0 | 0.0 | 1.0 |
| PNHPIJKH_44 | 0.0 | 1.0 | 0.0 |
| PNHPIJKH_45 | 1.0 | 0.0 | 1.0 |
| PNHPIJKH_46 | 0.0 | 1.0 | 0.0 |
| PNHPIJKH_47 | 0.0 | 1.0 | 0.0 |
| PNHPIJKH_48 | 1.0 | 0.0 | 1.0 |
| PNHPIJKH_49 | 0.0 | 1.0 | 0.0 |
| PNHPIJKH_50 | 0.0 | 1.0 | 0.0 |
| PNHPIJKH_51 | 1.0 | 0.0 | 1.0 |
| PNHPIJKH_52 | 0.0 | 1.0 | 0.0 |
| PNHPIJKH_53 | 0.0 | 1.0 | 0.0 |
| PNHPIJKH_54 | 0.0 | 1.0 | 0.0 |
| PNHPIJKH_55 | 1.0 | 0.0 | 1.0 |
| PNHPIJKH_56 | 0.0 | 1.0 | 0.0 |
| PNHPIJKH_57 | 0.0 | 1.0 | 0.0 |
| PNHPIJKH_59 | 0.0 | 1.0 | 0.0 |
| PNHPIJKH_60 | 0.0 | 1.0 | 0.0 |
| PNHPIJKH_61 | 1.0 | 0.0 | 1.0 |
| PNHPIJKH_62 | 1.0 | 0.0 | 1.0 |
| PNHPIJKH_63 | 1.0 | 0.0 | 1.0 |
| PNHPIJKH_64 | 1.0 | 0.0 | 1.0 |
| PNHPIJKH_65 | 0.0 | 1.0 | 0.0 |
| PNHPIJKH_66 | 1.0 | 0.0 | 1.0 |
| PNHPIJKH_67 | 0.0 | 1.0 | 0.0 |
| PNHPIJKH_69 | 1.0 | 0.0 | 1.0 |
| PNHPIJKH_70 | 0.0 | 1.0 | 0.0 |
| PNHPIJKH_71 | 0.0 | 1.0 | 0.0 |
| PNHPIJKH_72 | 1.0 | 0.0 | 1.0 |
| PNHPIJKH_73 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PNHPIJKH_6 | 12365 | 27651 | False | Siphoviridae | VOG4557, VOG1581, VOG1887, VOG3434, VOG4555, VOG2806, VOG0720, VOG5101, VOG1574, VOG6459, VOG4841, VOG6495, VOG9502 |
| PNHPIJKH_6 | 34369 | 39979 | False | Siphoviridae | VOG4552, VOG5091, VOG4567, VOG4552, VOG2038, VOG8271 |
| PNHPIJKH_7 | 54462 | 75473 | False | Siphoviridae | VOG1574, VOG5101, VOG0720, VOG4555, VOG4553, VOG1581, VOG5601, VOG6163, VOG3653, VOG9722, VOG3416, VOG4598 |
Phigaro v2.4.0 (Database: Jan. 2024 release)