Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| KINEKLBG_31 | 39734 | 39030 | WalR | 3.83e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| KINEKLBG_28 | 36870 | 37064 | CspR | 7.97e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| KINEKLBG_28 | 36870 | 37067 | CspA | 1.22e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| KINEKLBG_17 | 1 | 936 | rep28 | 936 / 936 | 100.00 | CP005948 |
| KINEKLBG_56 | 3586 | 4391 | rep38 | 816 / 903 | 82.84 | CP005943 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| KINEKLBG_1 | 1.0 | 0.0 | 1.0 |
| KINEKLBG_2 | 1.0 | 0.0 | 1.0 |
| KINEKLBG_3 | 1.0 | 0.0 | 1.0 |
| KINEKLBG_4 | 1.0 | 0.0 | 1.0 |
| KINEKLBG_5 | 1.0 | 0.0 | 1.0 |
| KINEKLBG_6 | 1.0 | 0.0 | 1.0 |
| KINEKLBG_7 | 1.0 | 0.0 | 1.0 |
| KINEKLBG_8 | 1.0 | 0.0 | 1.0 |
| KINEKLBG_9 | 1.0 | 0.0 | 1.0 |
| KINEKLBG_10 | 1.0 | 0.0 | 1.0 |
| KINEKLBG_11 | 1.0 | 0.0 | 1.0 |
| KINEKLBG_12 | 1.0 | 0.0 | 1.0 |
| KINEKLBG_13 | 1.0 | 0.0 | 1.0 |
| KINEKLBG_14 | 1.0 | 0.0 | 1.0 |
| KINEKLBG_15 | 1.0 | 0.0 | 1.0 |
| KINEKLBG_16 | 1.0 | 0.0 | 1.0 |
| KINEKLBG_17 | 1.0 | 0.0 | 1.0 |
| KINEKLBG_18 | 1.0 | 0.0 | 1.0 |
| KINEKLBG_19 | 1.0 | 0.0 | 1.0 |
| KINEKLBG_20 | 1.0 | 0.0 | 1.0 |
| KINEKLBG_21 | 1.0 | 0.0 | 1.0 |
| KINEKLBG_22 | 0.0 | 1.0 | 0.0 |
| KINEKLBG_23 | 0.0 | 1.0 | 0.0 |
| KINEKLBG_24 | 0.0 | 1.0 | 0.0 |
| KINEKLBG_25 | 0.0 | 1.0 | 0.0 |
| KINEKLBG_26 | 0.0 | 1.0 | 0.0 |
| KINEKLBG_27 | 0.0 | 1.0 | 0.0 |
| KINEKLBG_28 | 0.0 | 1.0 | 0.0 |
| KINEKLBG_29 | 0.0 | 1.0 | 0.0 |
| KINEKLBG_30 | 0.0 | 1.0 | 0.0 |
| KINEKLBG_31 | 0.0 | 1.0 | 0.0 |
| KINEKLBG_32 | 0.0 | 1.0 | 0.0 |
| KINEKLBG_33 | 0.0 | 1.0 | 0.0 |
| KINEKLBG_34 | 0.0 | 1.0 | 0.0 |
| KINEKLBG_35 | 0.0 | 1.0 | 0.0 |
| KINEKLBG_36 | 0.0 | 1.0 | 0.0 |
| KINEKLBG_37 | 0.0 | 1.0 | 0.0 |
| KINEKLBG_38 | 0.0 | 1.0 | 0.0 |
| KINEKLBG_39 | 0.0 | 1.0 | 0.0 |
| KINEKLBG_40 | 0.0 | 1.0 | 0.0 |
| KINEKLBG_41 | 0.0 | 1.0 | 0.0 |
| KINEKLBG_42 | 0.0 | 1.0 | 0.0 |
| KINEKLBG_43 | 0.0 | 1.0 | 0.0 |
| KINEKLBG_44 | 0.0 | 1.0 | 0.0 |
| KINEKLBG_45 | 0.0 | 1.0 | 0.0 |
| KINEKLBG_46 | 0.0 | 1.0 | 0.0 |
| KINEKLBG_47 | 0.0 | 1.0 | 0.0 |
| KINEKLBG_48 | 0.0 | 1.0 | 0.0 |
| KINEKLBG_49 | 0.0 | 1.0 | 0.0 |
| KINEKLBG_50 | 0.0 | 1.0 | 0.0 |
| KINEKLBG_51 | 0.0 | 1.0 | 0.0 |
| KINEKLBG_52 | 0.0 | 1.0 | 0.0 |
| KINEKLBG_53 | 0.0 | 1.0 | 0.0 |
| KINEKLBG_54 | 1.0 | 0.0 | 1.0 |
| KINEKLBG_55 | 0.0 | 1.0 | 0.0 |
| KINEKLBG_56 | 1.0 | 0.0 | 1.0 |
| KINEKLBG_57 | 0.0 | 1.0 | 0.0 |
| KINEKLBG_58 | 0.0 | 1.0 | 0.0 |
| KINEKLBG_59 | 0.0 | 1.0 | 0.0 |
| KINEKLBG_60 | 0.0 | 1.0 | 0.0 |
| KINEKLBG_61 | 1.0 | 0.0 | 1.0 |
| KINEKLBG_62 | 0.0 | 1.0 | 0.0 |
| KINEKLBG_63 | 1.0 | 0.0 | 1.0 |
| KINEKLBG_65 | 1.0 | 0.0 | 1.0 |
| KINEKLBG_66 | 0.0 | 1.0 | 0.0 |
| KINEKLBG_68 | 0.0 | 1.0 | 0.0 |
| KINEKLBG_69 | 1.0 | 0.0 | 1.0 |
| KINEKLBG_70 | 0.0 | 1.0 | 0.0 |
| KINEKLBG_72 | 1.0 | 0.0 | 1.0 |
| KINEKLBG_73 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| KINEKLBG_22 | 79846 | 85256 | False | Siphoviridae | VOG0181, VOG0321, VOG4548, VOG0322, VOG6545 |
| KINEKLBG_22 | 91934 | 115508 | False | Siphoviridae | VOG4844, VOG4556, VOG4573, VOG4553, VOG0562, VOG4589, VOG0539, VOG0704, VOG4586, VOG0541, VOG6163, VOG0801, VOG4619, VOG3498, VOG8917, VOG9888, VOG0602, VOG8294, VOG9222, VOG9747 |
| KINEKLBG_24 | 183480 | 207466 | False | Siphoviridae | VOG10957, VOG4599, VOG4605, VOG0660, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG4841, VOG0198, VOG3643, VOG0044, VOG0586 |
| KINEKLBG_25 | 151371 | 172563 | False | Siphoviridae | VOG8294, VOG4856, VOG3462, VOG0801, VOG6163, VOG0725, VOG0799, VOG0724, VOG9583, VOG4713, VOG1329, VOG4555, VOG4564, VOG0720, VOG10227, VOG0796, VOG1183, VOG5616 |
| KINEKLBG_25 | 176297 | 201361 | False | Siphoviridae | VOG0189, VOG5046, VOG0186, VOG1309, VOG0181, VOG6495, VOG6495, VOG4602, VOG7508, VOG7508, VOG0985, VOG1788, VOG0275, VOG0198, VOG0204, VOG4553, VOG4556, VOG2935, VOG4544, VOG4581, VOG4841, VOG0205, VOG4609, VOG4632 |
Phigaro v2.4.0 (Database: Jan. 2024 release)