Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| GIMOEGNH_90 | 7312 | 6608 | WalR | 6.10e-116 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| GIMOEGNH_10 | 45668 | 45862 | CspR | 2.18e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| GIMOEGNH_10 | 45668 | 45865 | CspA | 3.35e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| GIMOEGNH_81 | 6139 | 7068 | rep28 | 930 / 930 | 97.63 | CP003162 |
| GIMOEGNH_55 | 16128 | 17003 | rep38 | 876 / 903 | 97.26 | CP005943 |
| GIMOEGNH_173 | 1483 | 2072 | repUS64 | 590 / 954 | 97.12 | JN601038 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GIMOEGNH_1 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_2 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_3 | 1.0 | 0.0 | 1.0 |
| GIMOEGNH_4 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_5 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_6 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_7 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_8 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_9 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_10 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_11 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_12 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_13 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_14 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_15 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_16 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_17 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_18 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_19 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_20 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_21 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_22 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_23 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_24 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_25 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_26 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_27 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_28 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_29 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_30 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_31 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_32 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_33 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_34 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_35 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_36 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_37 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_38 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_39 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_40 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_41 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_42 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_43 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_44 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_45 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_46 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_47 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_48 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_49 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_50 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_51 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_52 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_53 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_54 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_55 | 1.0 | 0.0 | 1.0 |
| GIMOEGNH_56 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_57 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_58 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_59 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_60 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_61 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_62 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_63 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_64 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_65 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_66 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_67 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_68 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_69 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_70 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_71 | 1.0 | 0.0 | 1.0 |
| GIMOEGNH_72 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_73 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_74 | 1.0 | 0.0 | 1.0 |
| GIMOEGNH_75 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_76 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_77 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_78 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_79 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_80 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_81 | 1.0 | 0.0 | 1.0 |
| GIMOEGNH_82 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_83 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_84 | 1.0 | 0.0 | 1.0 |
| GIMOEGNH_85 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_86 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_87 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_88 | 1.0 | 0.0 | 1.0 |
| GIMOEGNH_89 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_90 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_91 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_92 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_93 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_94 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_95 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_96 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_97 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_98 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_99 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_100 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_101 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_102 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_103 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_104 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_105 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_106 | 1.0 | 0.0 | 1.0 |
| GIMOEGNH_107 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_108 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_109 | 1.0 | 0.0 | 1.0 |
| GIMOEGNH_110 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_111 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_112 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_113 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_114 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_115 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_116 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_117 | 1.0 | 0.0 | 1.0 |
| GIMOEGNH_118 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_119 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_120 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_121 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_122 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_123 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_124 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_125 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_126 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_127 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_128 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_129 | 1.0 | 0.0 | 1.0 |
| GIMOEGNH_130 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_131 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_132 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_133 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_134 | 1.0 | 0.0 | 1.0 |
| GIMOEGNH_135 | 1.0 | 0.0 | 1.0 |
| GIMOEGNH_136 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_137 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_138 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_139 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_140 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_141 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_142 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_143 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_144 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_145 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_146 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_147 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_148 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_149 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_150 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_151 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_152 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_153 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_154 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_155 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_156 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_157 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_158 | 1.0 | 0.0 | 1.0 |
| GIMOEGNH_159 | 1.0 | 0.0 | 1.0 |
| GIMOEGNH_161 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_162 | 1.0 | 0.0 | 1.0 |
| GIMOEGNH_163 | 1.0 | 0.0 | 1.0 |
| GIMOEGNH_164 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_165 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_166 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_167 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_168 | 1.0 | 0.0 | 1.0 |
| GIMOEGNH_169 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_170 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_171 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_172 | 1.0 | 0.0 | 1.0 |
| GIMOEGNH_173 | 1.0 | 0.0 | 1.0 |
| GIMOEGNH_174 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_176 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_177 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_178 | 1.0 | 0.0 | 1.0 |
| GIMOEGNH_179 | 1.0 | 0.0 | 1.0 |
| GIMOEGNH_180 | 1.0 | 0.0 | 1.0 |
| GIMOEGNH_182 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_183 | 1.0 | 0.0 | 1.0 |
| GIMOEGNH_184 | 1.0 | 0.0 | 1.0 |
| GIMOEGNH_185 | 1.0 | 0.0 | 1.0 |
| GIMOEGNH_186 | 1.0 | 0.0 | 1.0 |
| GIMOEGNH_187 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_188 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_189 | 1.0 | 0.0 | 1.0 |
| GIMOEGNH_190 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_191 | 1.0 | 0.0 | 1.0 |
| GIMOEGNH_192 | 0.0 | 1.0 | 0.0 |
| GIMOEGNH_193 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GIMOEGNH_8 | 7905 | 38327 | False | Siphoviridae | VOG1637, VOG8294, VOG9998, VOG8870, VOG10957, VOG4599, VOG4605, VOG4686, VOG0660, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG1886, VOG4581, VOG4841, VOG0198, VOG3643, VOG0044, VOG4571, VOG4693, VOG0189 |
| GIMOEGNH_36 | 12344 | 22418 | False | Siphoviridae | VOG4632, VOG4609, VOG6414, VOG0205, VOG4841, VOG4581, VOG1886, VOG2935, VOG4556, VOG4568, VOG4553 |
Phigaro v2.4.0 (Database: Jan. 2024 release)