Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PDGNGKJA_3 | 31758 | 31952 | CspA | 5.40e-28 | cold shock protein | 83.08 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PDGNGKJA_1 | 0.0 | 1.0 | 0.0 |
| PDGNGKJA_2 | 0.0 | 1.0 | 0.0 |
| PDGNGKJA_3 | 0.0 | 1.0 | 0.0 |
| PDGNGKJA_4 | 0.0 | 1.0 | 0.0 |
| PDGNGKJA_5 | 0.0 | 1.0 | 0.0 |
| PDGNGKJA_6 | 0.0 | 1.0 | 0.0 |
| PDGNGKJA_7 | 0.0 | 1.0 | 0.0 |
| PDGNGKJA_8 | 0.0 | 1.0 | 0.0 |
| PDGNGKJA_9 | 0.0 | 1.0 | 0.0 |
| PDGNGKJA_10 | 0.0 | 1.0 | 0.0 |
| PDGNGKJA_11 | 0.0 | 1.0 | 0.0 |
| PDGNGKJA_12 | 0.0 | 1.0 | 0.0 |
| PDGNGKJA_13 | 0.0 | 1.0 | 0.0 |
| PDGNGKJA_14 | 0.0 | 1.0 | 0.0 |
| PDGNGKJA_15 | 0.0 | 1.0 | 0.0 |
| PDGNGKJA_16 | 0.0 | 1.0 | 0.0 |
| PDGNGKJA_17 | 0.0 | 1.0 | 0.0 |
| PDGNGKJA_18 | 0.0 | 1.0 | 0.0 |
| PDGNGKJA_19 | 0.0 | 1.0 | 0.0 |
| PDGNGKJA_20 | 0.0 | 1.0 | 0.0 |
| PDGNGKJA_21 | 0.0 | 1.0 | 0.0 |
| PDGNGKJA_22 | 0.0 | 1.0 | 0.0 |
| PDGNGKJA_23 | 0.0 | 1.0 | 0.0 |
| PDGNGKJA_24 | 0.0 | 1.0 | 0.0 |
| PDGNGKJA_25 | 0.0 | 1.0 | 0.0 |
| PDGNGKJA_26 | 0.0 | 1.0 | 0.0 |
| PDGNGKJA_27 | 0.0 | 1.0 | 0.0 |
| PDGNGKJA_28 | 0.0 | 1.0 | 0.0 |
| PDGNGKJA_29 | 0.0 | 1.0 | 0.0 |
| PDGNGKJA_30 | 0.0 | 1.0 | 0.0 |
| PDGNGKJA_31 | 0.0 | 1.0 | 0.0 |
| PDGNGKJA_32 | 0.0 | 1.0 | 0.0 |
| PDGNGKJA_33 | 0.0 | 1.0 | 0.0 |
| PDGNGKJA_34 | 1.0 | 0.0 | 1.0 |
| PDGNGKJA_35 | 0.0 | 1.0 | 0.0 |
| PDGNGKJA_36 | 0.0 | 1.0 | 0.0 |
| PDGNGKJA_37 | 0.0 | 1.0 | 0.0 |
| PDGNGKJA_38 | 0.0 | 1.0 | 0.0 |
| PDGNGKJA_39 | 1.0 | 0.0 | 1.0 |
| PDGNGKJA_40 | 0.0 | 1.0 | 0.0 |
| PDGNGKJA_41 | 0.0 | 1.0 | 0.0 |
| PDGNGKJA_42 | 0.0 | 1.0 | 0.0 |
| PDGNGKJA_43 | 0.0 | 1.0 | 0.0 |
| PDGNGKJA_44 | 1.0 | 0.0 | 1.0 |
| PDGNGKJA_45 | 0.0 | 1.0 | 0.0 |
| PDGNGKJA_46 | 0.0 | 1.0 | 0.0 |
| PDGNGKJA_47 | 0.0 | 1.0 | 0.0 |
| PDGNGKJA_48 | 0.0 | 1.0 | 0.0 |
| PDGNGKJA_49 | 0.0 | 1.0 | 0.0 |
| PDGNGKJA_50 | 0.0 | 1.0 | 0.0 |
| PDGNGKJA_51 | 0.0 | 1.0 | 0.0 |
| PDGNGKJA_52 | 0.0 | 1.0 | 0.0 |
| PDGNGKJA_53 | 1.0 | 0.0 | 1.0 |
| PDGNGKJA_54 | 0.0 | 1.0 | 0.0 |
| PDGNGKJA_55 | 0.0 | 1.0 | 0.0 |
| PDGNGKJA_56 | 0.0 | 1.0 | 0.0 |
| PDGNGKJA_57 | 0.0 | 1.0 | 0.0 |
| PDGNGKJA_58 | 1.0 | 0.0 | 1.0 |
| PDGNGKJA_59 | 1.0 | 0.0 | 1.0 |
| PDGNGKJA_60 | 0.0 | 1.0 | 0.0 |
| PDGNGKJA_61 | 1.0 | 0.0 | 1.0 |
| PDGNGKJA_62 | 0.0 | 1.0 | 0.0 |
| PDGNGKJA_64 | 1.0 | 0.0 | 1.0 |
| PDGNGKJA_65 | 0.0 | 1.0 | 0.0 |
| PDGNGKJA_66 | 1.0 | 0.0 | 1.0 |
| PDGNGKJA_67 | 0.0 | 1.0 | 0.0 |
| PDGNGKJA_68 | 0.0 | 1.0 | 0.0 |
| PDGNGKJA_70 | 0.0 | 1.0 | 0.0 |
| PDGNGKJA_71 | 0.0 | 1.0 | 0.0 |
| PDGNGKJA_72 | 1.0 | 0.0 | 1.0 |
| PDGNGKJA_73 | 1.0 | 0.0 | 1.0 |
| PDGNGKJA_74 | 1.0 | 0.0 | 1.0 |
| PDGNGKJA_75 | 1.0 | 0.0 | 1.0 |
| PDGNGKJA_77 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PDGNGKJA_1 | 53346 | 98974 | True | Siphoviridae | VOG4626, VOG9997, VOG0565, VOG10972, VOG3462, VOG0801, VOG0083, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG1886, VOG4581, VOG4841, VOG1323, VOG0198, VOG6495, VOG4552, VOG0536, VOG10904, VOG0189, VOG8647, VOG0226, VOG0283, VOG9708, VOG2228, VOG4881, VOG8426, VOG4552, VOG4603, VOG6495, VOG0982, VOG4821, VOG4821, VOG0792, VOG5088, VOG0275, VOG5378, VOG3325, VOG4156 |
Phigaro v2.4.0 (Database: Jan. 2024 release)