Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JPOMIJPK_3 | 31758 | 31952 | CspA | 5.40e-28 | cold shock protein | 83.08 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JPOMIJPK_1 | 0.0 | 1.0 | 0.0 |
| JPOMIJPK_2 | 0.0 | 1.0 | 0.0 |
| JPOMIJPK_3 | 0.0 | 1.0 | 0.0 |
| JPOMIJPK_4 | 0.0 | 1.0 | 0.0 |
| JPOMIJPK_5 | 0.0 | 1.0 | 0.0 |
| JPOMIJPK_6 | 0.0 | 1.0 | 0.0 |
| JPOMIJPK_7 | 0.0 | 1.0 | 0.0 |
| JPOMIJPK_8 | 0.0 | 1.0 | 0.0 |
| JPOMIJPK_9 | 0.0 | 1.0 | 0.0 |
| JPOMIJPK_10 | 0.0 | 1.0 | 0.0 |
| JPOMIJPK_11 | 0.0 | 1.0 | 0.0 |
| JPOMIJPK_12 | 0.0 | 1.0 | 0.0 |
| JPOMIJPK_13 | 0.0 | 1.0 | 0.0 |
| JPOMIJPK_14 | 0.0 | 1.0 | 0.0 |
| JPOMIJPK_15 | 0.0 | 1.0 | 0.0 |
| JPOMIJPK_16 | 0.0 | 1.0 | 0.0 |
| JPOMIJPK_17 | 0.0 | 1.0 | 0.0 |
| JPOMIJPK_18 | 0.0 | 1.0 | 0.0 |
| JPOMIJPK_19 | 0.0 | 1.0 | 0.0 |
| JPOMIJPK_20 | 0.0 | 1.0 | 0.0 |
| JPOMIJPK_21 | 0.0 | 1.0 | 0.0 |
| JPOMIJPK_22 | 0.0 | 1.0 | 0.0 |
| JPOMIJPK_23 | 0.0 | 1.0 | 0.0 |
| JPOMIJPK_24 | 0.0 | 1.0 | 0.0 |
| JPOMIJPK_25 | 0.0 | 1.0 | 0.0 |
| JPOMIJPK_26 | 0.0 | 1.0 | 0.0 |
| JPOMIJPK_27 | 0.0 | 1.0 | 0.0 |
| JPOMIJPK_28 | 0.0 | 1.0 | 0.0 |
| JPOMIJPK_29 | 0.0 | 1.0 | 0.0 |
| JPOMIJPK_30 | 0.0 | 1.0 | 0.0 |
| JPOMIJPK_31 | 0.0 | 1.0 | 0.0 |
| JPOMIJPK_32 | 0.0 | 1.0 | 0.0 |
| JPOMIJPK_33 | 1.0 | 0.0 | 1.0 |
| JPOMIJPK_34 | 0.0 | 1.0 | 0.0 |
| JPOMIJPK_35 | 0.0 | 1.0 | 0.0 |
| JPOMIJPK_36 | 0.0 | 1.0 | 0.0 |
| JPOMIJPK_37 | 0.0 | 1.0 | 0.0 |
| JPOMIJPK_38 | 1.0 | 0.0 | 1.0 |
| JPOMIJPK_39 | 0.0 | 1.0 | 0.0 |
| JPOMIJPK_40 | 0.0 | 1.0 | 0.0 |
| JPOMIJPK_41 | 0.0 | 1.0 | 0.0 |
| JPOMIJPK_42 | 0.0 | 1.0 | 0.0 |
| JPOMIJPK_43 | 0.0 | 1.0 | 0.0 |
| JPOMIJPK_44 | 1.0 | 0.0 | 1.0 |
| JPOMIJPK_45 | 0.0 | 1.0 | 0.0 |
| JPOMIJPK_46 | 0.0 | 1.0 | 0.0 |
| JPOMIJPK_47 | 0.0 | 1.0 | 0.0 |
| JPOMIJPK_48 | 0.0 | 1.0 | 0.0 |
| JPOMIJPK_49 | 0.0 | 1.0 | 0.0 |
| JPOMIJPK_50 | 0.0 | 1.0 | 0.0 |
| JPOMIJPK_51 | 0.0 | 1.0 | 0.0 |
| JPOMIJPK_52 | 1.0 | 0.0 | 1.0 |
| JPOMIJPK_53 | 0.0 | 1.0 | 0.0 |
| JPOMIJPK_54 | 0.0 | 1.0 | 0.0 |
| JPOMIJPK_55 | 0.0 | 1.0 | 0.0 |
| JPOMIJPK_56 | 0.0 | 1.0 | 0.0 |
| JPOMIJPK_57 | 1.0 | 0.0 | 1.0 |
| JPOMIJPK_58 | 1.0 | 0.0 | 1.0 |
| JPOMIJPK_59 | 0.0 | 1.0 | 0.0 |
| JPOMIJPK_60 | 1.0 | 0.0 | 1.0 |
| JPOMIJPK_61 | 0.0 | 1.0 | 0.0 |
| JPOMIJPK_62 | 0.0 | 1.0 | 0.0 |
| JPOMIJPK_64 | 1.0 | 0.0 | 1.0 |
| JPOMIJPK_65 | 0.0 | 1.0 | 0.0 |
| JPOMIJPK_66 | 1.0 | 0.0 | 1.0 |
| JPOMIJPK_67 | 1.0 | 0.0 | 1.0 |
| JPOMIJPK_68 | 0.0 | 1.0 | 0.0 |
| JPOMIJPK_69 | 0.0 | 1.0 | 0.0 |
| JPOMIJPK_71 | 0.0 | 1.0 | 0.0 |
| JPOMIJPK_72 | 1.0 | 0.0 | 1.0 |
| JPOMIJPK_73 | 0.0 | 1.0 | 0.0 |
| JPOMIJPK_75 | 1.0 | 0.0 | 1.0 |
| JPOMIJPK_76 | 1.0 | 0.0 | 1.0 |
| JPOMIJPK_77 | 1.0 | 0.0 | 1.0 |
| JPOMIJPK_78 | 1.0 | 0.0 | 1.0 |
| JPOMIJPK_79 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JPOMIJPK_1 | 53346 | 98198 | True | Siphoviridae | VOG4626, VOG9997, VOG0565, VOG10972, VOG3462, VOG0801, VOG0083, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG1886, VOG4581, VOG4841, VOG1323, VOG0198, VOG6495, VOG4552, VOG0536, VOG4177, VOG0189, VOG8647, VOG0226, VOG0283, VOG9708, VOG2228, VOG4881, VOG8426, VOG4552, VOG4603, VOG6495, VOG0982, VOG4821, VOG4821, VOG0792, VOG5088, VOG0275, VOG5378, VOG3325, VOG4156 |
Phigaro v2.4.0 (Database: Jan. 2024 release)