Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| OIJJHOIG_43 | 4390 | 4584 | CspA | 9.27e-29 | cold shock protein | 83.08 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| OIJJHOIG_1 | 0.0 | 1.0 | 0.0 |
| OIJJHOIG_2 | 0.0 | 1.0 | 0.0 |
| OIJJHOIG_3 | 0.0 | 1.0 | 0.0 |
| OIJJHOIG_4 | 0.0 | 1.0 | 0.0 |
| OIJJHOIG_5 | 0.0 | 1.0 | 0.0 |
| OIJJHOIG_6 | 0.0 | 1.0 | 0.0 |
| OIJJHOIG_7 | 0.0 | 1.0 | 0.0 |
| OIJJHOIG_8 | 0.0 | 1.0 | 0.0 |
| OIJJHOIG_9 | 0.0 | 1.0 | 0.0 |
| OIJJHOIG_10 | 0.0 | 1.0 | 0.0 |
| OIJJHOIG_11 | 0.0 | 1.0 | 0.0 |
| OIJJHOIG_12 | 0.0 | 1.0 | 0.0 |
| OIJJHOIG_13 | 0.0 | 1.0 | 0.0 |
| OIJJHOIG_14 | 0.0 | 1.0 | 0.0 |
| OIJJHOIG_15 | 0.0 | 1.0 | 0.0 |
| OIJJHOIG_16 | 0.0 | 1.0 | 0.0 |
| OIJJHOIG_17 | 0.0 | 1.0 | 0.0 |
| OIJJHOIG_18 | 0.0 | 1.0 | 0.0 |
| OIJJHOIG_19 | 0.0 | 1.0 | 0.0 |
| OIJJHOIG_20 | 0.0 | 1.0 | 0.0 |
| OIJJHOIG_21 | 0.0 | 1.0 | 0.0 |
| OIJJHOIG_22 | 1.0 | 0.0 | 1.0 |
| OIJJHOIG_23 | 0.0 | 1.0 | 0.0 |
| OIJJHOIG_24 | 0.0 | 1.0 | 0.0 |
| OIJJHOIG_25 | 0.0 | 1.0 | 0.0 |
| OIJJHOIG_26 | 0.0 | 1.0 | 0.0 |
| OIJJHOIG_27 | 0.0 | 1.0 | 0.0 |
| OIJJHOIG_28 | 0.0 | 1.0 | 0.0 |
| OIJJHOIG_29 | 0.0 | 1.0 | 0.0 |
| OIJJHOIG_30 | 0.0 | 1.0 | 0.0 |
| OIJJHOIG_31 | 0.0 | 1.0 | 0.0 |
| OIJJHOIG_32 | 0.0 | 1.0 | 0.0 |
| OIJJHOIG_33 | 0.0 | 1.0 | 0.0 |
| OIJJHOIG_34 | 0.0 | 1.0 | 0.0 |
| OIJJHOIG_35 | 0.0 | 1.0 | 0.0 |
| OIJJHOIG_36 | 0.0 | 1.0 | 0.0 |
| OIJJHOIG_37 | 0.0 | 1.0 | 0.0 |
| OIJJHOIG_38 | 1.0 | 0.0 | 1.0 |
| OIJJHOIG_39 | 0.0 | 1.0 | 0.0 |
| OIJJHOIG_40 | 0.0 | 1.0 | 0.0 |
| OIJJHOIG_41 | 0.0 | 1.0 | 0.0 |
| OIJJHOIG_42 | 0.0 | 1.0 | 0.0 |
| OIJJHOIG_43 | 0.0 | 1.0 | 0.0 |
| OIJJHOIG_44 | 0.0 | 1.0 | 0.0 |
| OIJJHOIG_45 | 0.0 | 1.0 | 0.0 |
| OIJJHOIG_46 | 0.0 | 1.0 | 0.0 |
| OIJJHOIG_47 | 0.0 | 1.0 | 0.0 |
| OIJJHOIG_48 | 0.0 | 1.0 | 0.0 |
| OIJJHOIG_49 | 1.0 | 0.0 | 1.0 |
| OIJJHOIG_50 | 0.0 | 1.0 | 0.0 |
| OIJJHOIG_51 | 0.0 | 1.0 | 0.0 |
| OIJJHOIG_52 | 0.0 | 1.0 | 0.0 |
| OIJJHOIG_53 | 0.0 | 1.0 | 0.0 |
| OIJJHOIG_54 | 0.0 | 1.0 | 0.0 |
| OIJJHOIG_55 | 0.0 | 1.0 | 0.0 |
| OIJJHOIG_56 | 0.0 | 1.0 | 0.0 |
| OIJJHOIG_57 | 0.0 | 1.0 | 0.0 |
| OIJJHOIG_58 | 0.0 | 1.0 | 0.0 |
| OIJJHOIG_59 | 0.0 | 1.0 | 0.0 |
| OIJJHOIG_60 | 0.0 | 1.0 | 0.0 |
| OIJJHOIG_61 | 0.0 | 1.0 | 0.0 |
| OIJJHOIG_62 | 0.0 | 1.0 | 0.0 |
| OIJJHOIG_63 | 0.0 | 1.0 | 0.0 |
| OIJJHOIG_64 | 0.0 | 1.0 | 0.0 |
| OIJJHOIG_65 | 0.0 | 1.0 | 0.0 |
| OIJJHOIG_66 | 0.0 | 1.0 | 0.0 |
| OIJJHOIG_67 | 0.0 | 1.0 | 0.0 |
| OIJJHOIG_68 | 0.0 | 1.0 | 0.0 |
| OIJJHOIG_69 | 0.0 | 1.0 | 0.0 |
| OIJJHOIG_70 | 0.0 | 1.0 | 0.0 |
| OIJJHOIG_71 | 0.0 | 1.0 | 0.0 |
| OIJJHOIG_72 | 0.0 | 1.0 | 0.0 |
| OIJJHOIG_73 | 0.0 | 1.0 | 0.0 |
| OIJJHOIG_74 | 1.0 | 0.0 | 1.0 |
| OIJJHOIG_75 | 0.0 | 1.0 | 0.0 |
| OIJJHOIG_76 | 1.0 | 0.0 | 1.0 |
| OIJJHOIG_77 | 0.0 | 1.0 | 0.0 |
| OIJJHOIG_78 | 1.0 | 0.0 | 1.0 |
| OIJJHOIG_79 | 1.0 | 0.0 | 1.0 |
| OIJJHOIG_80 | 1.0 | 0.0 | 1.0 |
| OIJJHOIG_81 | 0.0 | 1.0 | 0.0 |
| OIJJHOIG_82 | 1.0 | 0.0 | 1.0 |
| OIJJHOIG_84 | 1.0 | 0.0 | 1.0 |
| OIJJHOIG_85 | 1.0 | 0.0 | 1.0 |
| OIJJHOIG_86 | 0.0 | 1.0 | 0.0 |
| OIJJHOIG_87 | 0.0 | 1.0 | 0.0 |
| OIJJHOIG_88 | 0.0 | 1.0 | 0.0 |
| OIJJHOIG_89 | 1.0 | 0.0 | 1.0 |
| OIJJHOIG_90 | 0.0 | 1.0 | 0.0 |
| OIJJHOIG_91 | 1.0 | 0.0 | 1.0 |
| OIJJHOIG_92 | 1.0 | 0.0 | 1.0 |
| OIJJHOIG_93 | 1.0 | 0.0 | 1.0 |
| OIJJHOIG_94 | 1.0 | 0.0 | 1.0 |
| OIJJHOIG_96 | 0.0 | 1.0 | 0.0 |
| OIJJHOIG_97 | 0.0 | 1.0 | 0.0 |
| OIJJHOIG_98 | 1.0 | 0.0 | 1.0 |
| OIJJHOIG_99 | 1.0 | 0.0 | 1.0 |
| OIJJHOIG_100 | 0.0 | 1.0 | 0.0 |
| OIJJHOIG_101 | 1.0 | 0.0 | 1.0 |
| OIJJHOIG_103 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| OIJJHOIG_1 | 71131 | 79841 | False | Myoviridae | VOG5944, VOG6414, VOG0862, VOG9667, VOG5353, VOG4552, VOG5420, VOG9708, VOG0283, VOG0226, VOG8647, VOG0189, VOG8966, VOG0536 |
| OIJJHOIG_1 | 80525 | 108734 | False | Siphoviridae | VOG0198, VOG0195, VOG7352, VOG4841, VOG4581, VOG1886, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG7149, VOG6163, VOG0801, VOG3462, VOG10972, VOG0565, VOG9997, VOG4626, VOG1637 |
| OIJJHOIG_2 | 49383 | 81576 | True | Siphoviridae | VOG0221, VOG0221, VOG0641, VOG4589, VOG0204, VOG4553, VOG4573, VOG4556, VOG4544, VOG4571, VOG4581, VOG6154, VOG0198, VOG4548, VOG0327, VOG4606, VOG0026, VOG0021, VOG1047, VOG7438, VOG0052, VOG11003, VOG0822, VOG4844 |
Phigaro v2.4.0 (Database: Jan. 2024 release)