Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PELFPHIE_39 | 2031 | 2228 | CspA | 1.82e-30 | cold shock protein | 86.36 | 100.00 | CAA62903 |
| PELFPHIE_39 | 2031 | 2225 | CspR | 3.31e-29 | cold shock protein | 84.61 | 98.48 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| PELFPHIE_42 | 6587 | 7621 | rep38 | 1037 / 1104 | 94.31 | CP002655 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PELFPHIE_1 | 0.0 | 1.0 | 0.0 |
| PELFPHIE_2 | 0.0 | 1.0 | 0.0 |
| PELFPHIE_3 | 0.0 | 1.0 | 0.0 |
| PELFPHIE_4 | 0.0 | 1.0 | 0.0 |
| PELFPHIE_5 | 0.0 | 1.0 | 0.0 |
| PELFPHIE_6 | 0.0 | 1.0 | 0.0 |
| PELFPHIE_7 | 0.0 | 1.0 | 0.0 |
| PELFPHIE_8 | 0.0 | 1.0 | 0.0 |
| PELFPHIE_9 | 0.0 | 1.0 | 0.0 |
| PELFPHIE_10 | 0.0 | 1.0 | 0.0 |
| PELFPHIE_11 | 0.0 | 1.0 | 0.0 |
| PELFPHIE_12 | 0.0 | 1.0 | 0.0 |
| PELFPHIE_13 | 0.0 | 1.0 | 0.0 |
| PELFPHIE_14 | 0.0 | 1.0 | 0.0 |
| PELFPHIE_15 | 0.0 | 1.0 | 0.0 |
| PELFPHIE_16 | 0.0 | 1.0 | 0.0 |
| PELFPHIE_17 | 0.0 | 1.0 | 0.0 |
| PELFPHIE_18 | 0.0 | 1.0 | 0.0 |
| PELFPHIE_19 | 0.0 | 1.0 | 0.0 |
| PELFPHIE_20 | 0.0 | 1.0 | 0.0 |
| PELFPHIE_21 | 1.0 | 0.0 | 1.0 |
| PELFPHIE_22 | 0.0 | 1.0 | 0.0 |
| PELFPHIE_23 | 0.0 | 1.0 | 0.0 |
| PELFPHIE_24 | 0.0 | 1.0 | 0.0 |
| PELFPHIE_25 | 0.0 | 1.0 | 0.0 |
| PELFPHIE_26 | 0.0 | 1.0 | 0.0 |
| PELFPHIE_27 | 0.0 | 1.0 | 0.0 |
| PELFPHIE_28 | 0.0 | 1.0 | 0.0 |
| PELFPHIE_29 | 0.0 | 1.0 | 0.0 |
| PELFPHIE_30 | 0.0 | 1.0 | 0.0 |
| PELFPHIE_31 | 0.0 | 1.0 | 0.0 |
| PELFPHIE_32 | 0.0 | 1.0 | 0.0 |
| PELFPHIE_33 | 0.0 | 1.0 | 0.0 |
| PELFPHIE_34 | 0.0 | 1.0 | 0.0 |
| PELFPHIE_35 | 0.0 | 1.0 | 0.0 |
| PELFPHIE_36 | 0.0 | 1.0 | 0.0 |
| PELFPHIE_37 | 0.0 | 1.0 | 0.0 |
| PELFPHIE_38 | 0.0 | 1.0 | 0.0 |
| PELFPHIE_39 | 0.0 | 1.0 | 0.0 |
| PELFPHIE_40 | 0.0 | 1.0 | 0.0 |
| PELFPHIE_41 | 0.0 | 1.0 | 0.0 |
| PELFPHIE_42 | 1.0 | 0.0 | 1.0 |
| PELFPHIE_43 | 0.0 | 1.0 | 0.0 |
| PELFPHIE_44 | 0.0 | 1.0 | 0.0 |
| PELFPHIE_45 | 0.0 | 1.0 | 0.0 |
| PELFPHIE_46 | 0.0 | 1.0 | 0.0 |
| PELFPHIE_47 | 0.0 | 1.0 | 0.0 |
| PELFPHIE_48 | 0.0 | 1.0 | 0.0 |
| PELFPHIE_49 | 1.0 | 0.0 | 1.0 |
| PELFPHIE_50 | 0.0 | 1.0 | 0.0 |
| PELFPHIE_51 | 0.0 | 1.0 | 0.0 |
| PELFPHIE_52 | 0.0 | 1.0 | 0.0 |
| PELFPHIE_53 | 1.0 | 0.0 | 1.0 |
| PELFPHIE_54 | 0.0 | 1.0 | 0.0 |
| PELFPHIE_55 | 0.0 | 1.0 | 0.0 |
| PELFPHIE_56 | 1.0 | 0.0 | 1.0 |
| PELFPHIE_57 | 0.0 | 1.0 | 0.0 |
| PELFPHIE_58 | 0.0 | 1.0 | 0.0 |
| PELFPHIE_59 | 0.0 | 1.0 | 0.0 |
| PELFPHIE_60 | 0.0 | 1.0 | 0.0 |
| PELFPHIE_61 | 0.0 | 1.0 | 0.0 |
| PELFPHIE_62 | 0.0 | 1.0 | 0.0 |
| PELFPHIE_63 | 0.0 | 1.0 | 0.0 |
| PELFPHIE_64 | 0.0 | 1.0 | 0.0 |
| PELFPHIE_65 | 0.0 | 1.0 | 0.0 |
| PELFPHIE_67 | 0.0 | 1.0 | 0.0 |
| PELFPHIE_68 | 0.0 | 1.0 | 0.0 |
| PELFPHIE_69 | 1.0 | 0.0 | 1.0 |
| PELFPHIE_70 | 0.0 | 1.0 | 0.0 |
| PELFPHIE_71 | 1.0 | 0.0 | 1.0 |
| PELFPHIE_72 | 0.0 | 1.0 | 0.0 |
| PELFPHIE_73 | 0.0 | 1.0 | 0.0 |
| PELFPHIE_74 | 0.0 | 1.0 | 0.0 |
| PELFPHIE_75 | 1.0 | 0.0 | 1.0 |
| PELFPHIE_76 | 1.0 | 0.0 | 1.0 |
| PELFPHIE_77 | 0.0 | 1.0 | 0.0 |
| PELFPHIE_78 | 1.0 | 0.0 | 1.0 |
| PELFPHIE_80 | 1.0 | 0.0 | 1.0 |
| PELFPHIE_81 | 1.0 | 0.0 | 1.0 |
| PELFPHIE_82 | 1.0 | 0.0 | 1.0 |
| PELFPHIE_83 | 1.0 | 0.0 | 1.0 |
| PELFPHIE_84 | 1.0 | 0.0 | 1.0 |
| PELFPHIE_85 | 1.0 | 0.0 | 1.0 |
| PELFPHIE_86 | 0.0 | 1.0 | 0.0 |
| PELFPHIE_87 | 1.0 | 0.0 | 1.0 |
| PELFPHIE_88 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PELFPHIE_4 | 75849 | 78991 | False | Unknown | VOG9460, VOG1309 |
| PELFPHIE_21 | 197 | 26032 | False | Siphoviridae | VOG4841, VOG4581, VOG4544, VOG4556, VOG4568, VOG4553, VOG0204, VOG4589, VOG0539, VOG0704, VOG4586, VOG2225, VOG9471, VOG6163, VOG0801, VOG3462, VOG10972, VOG3405, VOG9997, VOG4856, VOG10223, VOG1637, VOG0703 |
| PELFPHIE_28 | 3741 | 16116 | False | Myoviridae | VOG6085, VOG0226, VOG0205, VOG0384, VOG0382, VOG0083, VOG5235 |
Phigaro v2.4.0 (Database: Jan. 2024 release)