Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| KHOLMADN_38 | 2031 | 2228 | CspA | 1.82e-30 | cold shock protein | 86.36 | 100.00 | CAA62903 |
| KHOLMADN_38 | 2031 | 2225 | CspR | 3.31e-29 | cold shock protein | 84.61 | 98.48 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| KHOLMADN_17 | 29396 | 30430 | rep38 | 1037 / 1104 | 94.31 | CP002655 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| KHOLMADN_1 | 0.0 | 1.0 | 0.0 |
| KHOLMADN_2 | 0.0 | 1.0 | 0.0 |
| KHOLMADN_3 | 0.0 | 1.0 | 0.0 |
| KHOLMADN_4 | 0.0 | 1.0 | 0.0 |
| KHOLMADN_5 | 0.0 | 1.0 | 0.0 |
| KHOLMADN_6 | 0.0 | 1.0 | 0.0 |
| KHOLMADN_7 | 0.0 | 1.0 | 0.0 |
| KHOLMADN_8 | 0.0 | 1.0 | 0.0 |
| KHOLMADN_9 | 0.0 | 1.0 | 0.0 |
| KHOLMADN_10 | 0.0 | 1.0 | 0.0 |
| KHOLMADN_11 | 0.0 | 1.0 | 0.0 |
| KHOLMADN_12 | 0.0 | 1.0 | 0.0 |
| KHOLMADN_13 | 0.0 | 1.0 | 0.0 |
| KHOLMADN_14 | 0.0 | 1.0 | 0.0 |
| KHOLMADN_15 | 0.0 | 1.0 | 0.0 |
| KHOLMADN_16 | 0.0 | 1.0 | 0.0 |
| KHOLMADN_17 | 0.0 | 1.0 | 0.0 |
| KHOLMADN_18 | 0.0 | 1.0 | 0.0 |
| KHOLMADN_19 | 0.0 | 1.0 | 0.0 |
| KHOLMADN_20 | 0.0 | 1.0 | 0.0 |
| KHOLMADN_21 | 0.0 | 1.0 | 0.0 |
| KHOLMADN_22 | 1.0 | 0.0 | 1.0 |
| KHOLMADN_23 | 0.0 | 1.0 | 0.0 |
| KHOLMADN_24 | 0.0 | 1.0 | 0.0 |
| KHOLMADN_25 | 0.0 | 1.0 | 0.0 |
| KHOLMADN_26 | 0.0 | 1.0 | 0.0 |
| KHOLMADN_27 | 0.0 | 1.0 | 0.0 |
| KHOLMADN_28 | 0.0 | 1.0 | 0.0 |
| KHOLMADN_29 | 0.0 | 1.0 | 0.0 |
| KHOLMADN_30 | 0.0 | 1.0 | 0.0 |
| KHOLMADN_31 | 0.0 | 1.0 | 0.0 |
| KHOLMADN_32 | 0.0 | 1.0 | 0.0 |
| KHOLMADN_33 | 0.0 | 1.0 | 0.0 |
| KHOLMADN_34 | 0.0 | 1.0 | 0.0 |
| KHOLMADN_35 | 0.0 | 1.0 | 0.0 |
| KHOLMADN_36 | 0.0 | 1.0 | 0.0 |
| KHOLMADN_37 | 0.0 | 1.0 | 0.0 |
| KHOLMADN_38 | 0.0 | 1.0 | 0.0 |
| KHOLMADN_39 | 0.0 | 1.0 | 0.0 |
| KHOLMADN_40 | 0.0 | 1.0 | 0.0 |
| KHOLMADN_41 | 0.0 | 1.0 | 0.0 |
| KHOLMADN_42 | 0.0 | 1.0 | 0.0 |
| KHOLMADN_43 | 0.0 | 1.0 | 0.0 |
| KHOLMADN_44 | 0.0 | 1.0 | 0.0 |
| KHOLMADN_45 | 0.0 | 1.0 | 0.0 |
| KHOLMADN_46 | 0.0 | 1.0 | 0.0 |
| KHOLMADN_47 | 1.0 | 0.0 | 1.0 |
| KHOLMADN_48 | 0.0 | 1.0 | 0.0 |
| KHOLMADN_49 | 0.0 | 1.0 | 0.0 |
| KHOLMADN_50 | 0.0 | 1.0 | 0.0 |
| KHOLMADN_51 | 0.0 | 1.0 | 0.0 |
| KHOLMADN_52 | 1.0 | 0.0 | 1.0 |
| KHOLMADN_53 | 0.0 | 1.0 | 0.0 |
| KHOLMADN_54 | 0.0 | 1.0 | 0.0 |
| KHOLMADN_55 | 1.0 | 0.0 | 1.0 |
| KHOLMADN_56 | 0.0 | 1.0 | 0.0 |
| KHOLMADN_57 | 0.0 | 1.0 | 0.0 |
| KHOLMADN_58 | 0.0 | 1.0 | 0.0 |
| KHOLMADN_59 | 0.0 | 1.0 | 0.0 |
| KHOLMADN_60 | 0.0 | 1.0 | 0.0 |
| KHOLMADN_61 | 0.0 | 1.0 | 0.0 |
| KHOLMADN_62 | 0.0 | 1.0 | 0.0 |
| KHOLMADN_63 | 0.0 | 1.0 | 0.0 |
| KHOLMADN_64 | 0.0 | 1.0 | 0.0 |
| KHOLMADN_66 | 0.0 | 1.0 | 0.0 |
| KHOLMADN_67 | 0.0 | 1.0 | 0.0 |
| KHOLMADN_68 | 1.0 | 0.0 | 1.0 |
| KHOLMADN_69 | 1.0 | 0.0 | 1.0 |
| KHOLMADN_70 | 0.0 | 1.0 | 0.0 |
| KHOLMADN_71 | 0.0 | 1.0 | 0.0 |
| KHOLMADN_72 | 0.0 | 1.0 | 0.0 |
| KHOLMADN_73 | 1.0 | 0.0 | 1.0 |
| KHOLMADN_74 | 1.0 | 0.0 | 1.0 |
| KHOLMADN_75 | 1.0 | 0.0 | 1.0 |
| KHOLMADN_76 | 0.0 | 1.0 | 0.0 |
| KHOLMADN_77 | 1.0 | 0.0 | 1.0 |
| KHOLMADN_79 | 1.0 | 0.0 | 1.0 |
| KHOLMADN_80 | 0.0 | 1.0 | 0.0 |
| KHOLMADN_81 | 1.0 | 0.0 | 1.0 |
| KHOLMADN_82 | 1.0 | 0.0 | 1.0 |
| KHOLMADN_83 | 1.0 | 0.0 | 1.0 |
| KHOLMADN_84 | 1.0 | 0.0 | 1.0 |
| KHOLMADN_85 | 1.0 | 0.0 | 1.0 |
| KHOLMADN_86 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| KHOLMADN_4 | 5024 | 12816 | False | Unknown | VOG0226, VOG0186, VOG1309, VOG9460, VOG2228, VOG4552, VOG7581, VOG7424 |
| KHOLMADN_7 | 34909 | 58312 | False | Myoviridae / Siphoviridae | VOG10038, VOG1292, VOG10457, VOG1176, VOG8295, VOG0025, VOG6085, VOG0226, VOG0205, VOG0384, VOG0382, VOG0083, VOG5235 |
| KHOLMADN_22 | 197 | 26032 | False | Siphoviridae | VOG4841, VOG4581, VOG4544, VOG4556, VOG4568, VOG4553, VOG0204, VOG4589, VOG0539, VOG0704, VOG4586, VOG2225, VOG9471, VOG6163, VOG0801, VOG3462, VOG10972, VOG3405, VOG9997, VOG4856, VOG10223, VOG1637, VOG0703 |
Phigaro v2.4.0 (Database: Jan. 2024 release)