Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HHOLBAFO_6 | 49665 | 49862 | CspA | 8.56e-30 | cold shock protein | 86.36 | 100.00 | CAA62903 |
| HHOLBAFO_6 | 49665 | 49859 | CspR | 1.55e-28 | cold shock protein | 84.61 | 98.48 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HHOLBAFO_1 | 0.0 | 1.0 | 0.0 |
| HHOLBAFO_2 | 0.0 | 1.0 | 0.0 |
| HHOLBAFO_3 | 0.0 | 1.0 | 0.0 |
| HHOLBAFO_4 | 0.0 | 1.0 | 0.0 |
| HHOLBAFO_5 | 0.0 | 1.0 | 0.0 |
| HHOLBAFO_6 | 0.0 | 1.0 | 0.0 |
| HHOLBAFO_7 | 0.0 | 1.0 | 0.0 |
| HHOLBAFO_8 | 0.0 | 1.0 | 0.0 |
| HHOLBAFO_9 | 0.0 | 1.0 | 0.0 |
| HHOLBAFO_10 | 0.0 | 1.0 | 0.0 |
| HHOLBAFO_11 | 0.0 | 1.0 | 0.0 |
| HHOLBAFO_12 | 0.0 | 1.0 | 0.0 |
| HHOLBAFO_13 | 0.0 | 1.0 | 0.0 |
| HHOLBAFO_14 | 0.0 | 1.0 | 0.0 |
| HHOLBAFO_15 | 0.0 | 1.0 | 0.0 |
| HHOLBAFO_16 | 0.0 | 1.0 | 0.0 |
| HHOLBAFO_17 | 0.0 | 1.0 | 0.0 |
| HHOLBAFO_18 | 0.0 | 1.0 | 0.0 |
| HHOLBAFO_19 | 0.0 | 1.0 | 0.0 |
| HHOLBAFO_20 | 0.0 | 1.0 | 0.0 |
| HHOLBAFO_21 | 0.0 | 1.0 | 0.0 |
| HHOLBAFO_22 | 0.0 | 1.0 | 0.0 |
| HHOLBAFO_23 | 0.0 | 1.0 | 0.0 |
| HHOLBAFO_24 | 0.0 | 1.0 | 0.0 |
| HHOLBAFO_25 | 0.0 | 1.0 | 0.0 |
| HHOLBAFO_26 | 0.0 | 1.0 | 0.0 |
| HHOLBAFO_27 | 0.0 | 1.0 | 0.0 |
| HHOLBAFO_28 | 0.0 | 1.0 | 0.0 |
| HHOLBAFO_29 | 0.0 | 1.0 | 0.0 |
| HHOLBAFO_30 | 0.0 | 1.0 | 0.0 |
| HHOLBAFO_31 | 0.0 | 1.0 | 0.0 |
| HHOLBAFO_32 | 0.0 | 1.0 | 0.0 |
| HHOLBAFO_33 | 0.0 | 1.0 | 0.0 |
| HHOLBAFO_34 | 0.0 | 1.0 | 0.0 |
| HHOLBAFO_35 | 0.0 | 1.0 | 0.0 |
| HHOLBAFO_36 | 0.0 | 1.0 | 0.0 |
| HHOLBAFO_37 | 0.0 | 1.0 | 0.0 |
| HHOLBAFO_38 | 0.0 | 1.0 | 0.0 |
| HHOLBAFO_39 | 1.0 | 0.0 | 1.0 |
| HHOLBAFO_40 | 0.0 | 1.0 | 0.0 |
| HHOLBAFO_41 | 0.0 | 1.0 | 0.0 |
| HHOLBAFO_42 | 0.0 | 1.0 | 0.0 |
| HHOLBAFO_43 | 0.0 | 1.0 | 0.0 |
| HHOLBAFO_44 | 0.0 | 1.0 | 0.0 |
| HHOLBAFO_45 | 0.0 | 1.0 | 0.0 |
| HHOLBAFO_46 | 0.0 | 1.0 | 0.0 |
| HHOLBAFO_47 | 0.0 | 1.0 | 0.0 |
| HHOLBAFO_48 | 0.0 | 1.0 | 0.0 |
| HHOLBAFO_49 | 0.0 | 1.0 | 0.0 |
| HHOLBAFO_50 | 1.0 | 0.0 | 1.0 |
| HHOLBAFO_51 | 0.0 | 1.0 | 0.0 |
| HHOLBAFO_52 | 1.0 | 0.0 | 1.0 |
| HHOLBAFO_53 | 0.0 | 1.0 | 0.0 |
| HHOLBAFO_54 | 0.0 | 1.0 | 0.0 |
| HHOLBAFO_55 | 0.0 | 1.0 | 0.0 |
| HHOLBAFO_56 | 0.0 | 1.0 | 0.0 |
| HHOLBAFO_57 | 0.0 | 1.0 | 0.0 |
| HHOLBAFO_58 | 1.0 | 0.0 | 1.0 |
| HHOLBAFO_59 | 0.0 | 1.0 | 0.0 |
| HHOLBAFO_60 | 0.0 | 1.0 | 0.0 |
| HHOLBAFO_61 | 0.0 | 1.0 | 0.0 |
| HHOLBAFO_62 | 0.0 | 1.0 | 0.0 |
| HHOLBAFO_63 | 0.0 | 1.0 | 0.0 |
| HHOLBAFO_64 | 0.0 | 1.0 | 0.0 |
| HHOLBAFO_65 | 0.0 | 1.0 | 0.0 |
| HHOLBAFO_66 | 0.0 | 1.0 | 0.0 |
| HHOLBAFO_67 | 1.0 | 0.0 | 1.0 |
| HHOLBAFO_68 | 1.0 | 0.0 | 1.0 |
| HHOLBAFO_70 | 1.0 | 0.0 | 1.0 |
| HHOLBAFO_71 | 1.0 | 0.0 | 1.0 |
| HHOLBAFO_72 | 1.0 | 0.0 | 1.0 |
| HHOLBAFO_75 | 0.0 | 1.0 | 0.0 |
| HHOLBAFO_77 | 1.0 | 0.0 | 1.0 |
| HHOLBAFO_78 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HHOLBAFO_1 | 72604 | 106242 | False | Siphoviridae | VOG4995, VOG4552, VOG2228, VOG1309, VOG0186, VOG0226, VOG4799, VOG0198, VOG9601, VOG3594, VOG4841, VOG4581, VOG4544, VOG4556, VOG4568, VOG4553, VOG0204, VOG4589, VOG0539, VOG0704, VOG4586, VOG2225, VOG9471, VOG6163, VOG0801, VOG3462, VOG10972, VOG9997, VOG4856, VOG4841, VOG1637 |
| HHOLBAFO_3 | 104464 | 114406 | False | Myoviridae | VOG0189, VOG5235, VOG0083, VOG0382, VOG0384, VOG0205 |
Phigaro v2.4.0 (Database: Jan. 2024 release)