Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 1 | 1.41 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NPPOHFPB_111 | 7650 | 9569 | tet(W) | ARO:3000194 | tet(W) | 96.71 | 100.00 | AJ222769.3 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| NPPOHFPB_111 | 7650 | 9569 | tet(W) | Doxycycline, Tetracycline, Minocycline | 98.96 | 100.00 | FN396364 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NPPOHFPB_111 | 7650 | 9566 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 99.53 | 100.00 | WP_000691721.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| NPPOHFPB_52 | 21917 | 21723 | CspA | 6.68e-29 | cold shock protein | 84.61 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| NPPOHFPB_3 | 47797 | 48835 | repUS67 | 1040 / 1039 | 97.02 | CP006012 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NPPOHFPB_1 | 1.0 | 0.0 | 1.0 |
| NPPOHFPB_3 | 1.0 | 0.0 | 1.0 |
| NPPOHFPB_4 | 1.0 | 0.0 | 1.0 |
| NPPOHFPB_5 | 0.0 | 1.0 | 0.0 |
| NPPOHFPB_6 | 0.0 | 1.0 | 0.0 |
| NPPOHFPB_7 | 0.0 | 1.0 | 0.0 |
| NPPOHFPB_8 | 0.0 | 1.0 | 0.0 |
| NPPOHFPB_9 | 0.0 | 1.0 | 0.0 |
| NPPOHFPB_11 | 1.0 | 0.0 | 1.0 |
| NPPOHFPB_12 | 1.0 | 0.0 | 1.0 |
| NPPOHFPB_13 | 1.0 | 0.0 | 1.0 |
| NPPOHFPB_14 | 1.0 | 0.0 | 1.0 |
| NPPOHFPB_15 | 0.0 | 1.0 | 0.0 |
| NPPOHFPB_16 | 1.0 | 0.0 | 1.0 |
| NPPOHFPB_18 | 0.0 | 1.0 | 0.0 |
| NPPOHFPB_19 | 0.0 | 1.0 | 0.0 |
| NPPOHFPB_20 | 0.0 | 1.0 | 0.0 |
| NPPOHFPB_21 | 0.0 | 1.0 | 0.0 |
| NPPOHFPB_22 | 0.0 | 1.0 | 0.0 |
| NPPOHFPB_23 | 0.0 | 1.0 | 0.0 |
| NPPOHFPB_25 | 0.0 | 1.0 | 0.0 |
| NPPOHFPB_26 | 0.0 | 1.0 | 0.0 |
| NPPOHFPB_27 | 0.0 | 1.0 | 0.0 |
| NPPOHFPB_29 | 1.0 | 0.0 | 1.0 |
| NPPOHFPB_31 | 0.0 | 1.0 | 0.0 |
| NPPOHFPB_32 | 0.0 | 1.0 | 0.0 |
| NPPOHFPB_33 | 0.0 | 1.0 | 0.0 |
| NPPOHFPB_35 | 0.0 | 1.0 | 0.0 |
| NPPOHFPB_36 | 0.0 | 1.0 | 0.0 |
| NPPOHFPB_37 | 1.0 | 0.0 | 1.0 |
| NPPOHFPB_42 | 0.0 | 1.0 | 0.0 |
| NPPOHFPB_44 | 0.0 | 1.0 | 0.0 |
| NPPOHFPB_47 | 0.0 | 1.0 | 0.0 |
| NPPOHFPB_48 | 1.0 | 0.0 | 1.0 |
| NPPOHFPB_50 | 0.0 | 1.0 | 0.0 |
| NPPOHFPB_51 | 0.0 | 1.0 | 0.0 |
| NPPOHFPB_52 | 0.0 | 1.0 | 0.0 |
| NPPOHFPB_53 | 0.0 | 1.0 | 0.0 |
| NPPOHFPB_55 | 0.0 | 1.0 | 0.0 |
| NPPOHFPB_56 | 0.0 | 1.0 | 0.0 |
| NPPOHFPB_57 | 0.0 | 1.0 | 0.0 |
| NPPOHFPB_58 | 1.0 | 0.0 | 1.0 |
| NPPOHFPB_60 | 0.0 | 1.0 | 0.0 |
| NPPOHFPB_61 | 1.0 | 0.0 | 1.0 |
| NPPOHFPB_63 | 1.0 | 0.0 | 1.0 |
| NPPOHFPB_64 | 0.0 | 1.0 | 0.0 |
| NPPOHFPB_65 | 1.0 | 0.0 | 1.0 |
| NPPOHFPB_66 | 0.0 | 1.0 | 0.0 |
| NPPOHFPB_67 | 0.0 | 1.0 | 0.0 |
| NPPOHFPB_68 | 1.0 | 0.0 | 1.0 |
| NPPOHFPB_69 | 0.0 | 1.0 | 0.0 |
| NPPOHFPB_71 | 0.0 | 1.0 | 0.0 |
| NPPOHFPB_72 | 0.0 | 1.0 | 0.0 |
| NPPOHFPB_73 | 0.0 | 1.0 | 0.0 |
| NPPOHFPB_74 | 0.0 | 1.0 | 0.0 |
| NPPOHFPB_75 | 1.0 | 0.0 | 1.0 |
| NPPOHFPB_77 | 0.0 | 1.0 | 0.0 |
| NPPOHFPB_78 | 1.0 | 0.0 | 1.0 |
| NPPOHFPB_79 | 0.0 | 1.0 | 0.0 |
| NPPOHFPB_80 | 0.0 | 1.0 | 0.0 |
| NPPOHFPB_81 | 0.0 | 1.0 | 0.0 |
| NPPOHFPB_82 | 1.0 | 0.0 | 1.0 |
| NPPOHFPB_83 | 0.0 | 1.0 | 0.0 |
| NPPOHFPB_84 | 1.0 | 0.0 | 1.0 |
| NPPOHFPB_85 | 0.0 | 1.0 | 0.0 |
| NPPOHFPB_86 | 0.0 | 1.0 | 0.0 |
| NPPOHFPB_87 | 0.0 | 1.0 | 0.0 |
| NPPOHFPB_88 | 1.0 | 0.0 | 1.0 |
| NPPOHFPB_89 | 0.0 | 1.0 | 0.0 |
| NPPOHFPB_90 | 0.0 | 1.0 | 0.0 |
| NPPOHFPB_93 | 0.0 | 1.0 | 0.0 |
| NPPOHFPB_96 | 1.0 | 0.0 | 1.0 |
| NPPOHFPB_97 | 0.0 | 1.0 | 0.0 |
| NPPOHFPB_98 | 0.0 | 1.0 | 0.0 |
| NPPOHFPB_100 | 0.0 | 1.0 | 0.0 |
| NPPOHFPB_101 | 1.0 | 0.0 | 1.0 |
| NPPOHFPB_102 | 1.0 | 0.0 | 1.0 |
| NPPOHFPB_103 | 0.0 | 1.0 | 0.0 |
| NPPOHFPB_104 | 0.0 | 1.0 | 0.0 |
| NPPOHFPB_105 | 0.0 | 1.0 | 0.0 |
| NPPOHFPB_106 | 0.0 | 1.0 | 0.0 |
| NPPOHFPB_107 | 1.0 | 0.0 | 1.0 |
| NPPOHFPB_108 | 0.0 | 1.0 | 0.0 |
| NPPOHFPB_109 | 1.0 | 0.0 | 1.0 |
| NPPOHFPB_110 | 0.0 | 1.0 | 0.0 |
| NPPOHFPB_111 | 1.0 | 0.0 | 1.0 |
| NPPOHFPB_112 | 0.0 | 1.0 | 0.0 |
| NPPOHFPB_113 | 1.0 | 0.0 | 1.0 |
| NPPOHFPB_114 | 0.0 | 1.0 | 0.0 |
| NPPOHFPB_115 | 1.0 | 0.0 | 1.0 |
| NPPOHFPB_116 | 0.0 | 1.0 | 0.0 |
| NPPOHFPB_117 | 0.0 | 1.0 | 0.0 |
| NPPOHFPB_120 | 0.0 | 1.0 | 0.0 |
| NPPOHFPB_121 | 0.0 | 1.0 | 0.0 |
| NPPOHFPB_122 | 1.0 | 0.0 | 1.0 |
| NPPOHFPB_123 | 0.0 | 1.0 | 0.0 |
| NPPOHFPB_124 | 0.0 | 1.0 | 0.0 |
| NPPOHFPB_125 | 0.0 | 1.0 | 0.0 |
| NPPOHFPB_126 | 0.0 | 1.0 | 0.0 |
| NPPOHFPB_127 | 0.0 | 1.0 | 0.0 |
| NPPOHFPB_129 | 0.0 | 1.0 | 0.0 |
| NPPOHFPB_130 | 0.0 | 1.0 | 0.0 |
| NPPOHFPB_131 | 0.0 | 1.0 | 0.0 |
| NPPOHFPB_133 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NPPOHFPB_5 | 66845 | 107389 | False | Siphoviridae | VOG4856, VOG3463, VOG3462, VOG0801, VOG8263, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4568, VOG4556, VOG1886, VOG4581, VOG4841, VOG0376, VOG0198, VOG1183, VOG1414, VOG0536, VOG5133, VOG0189, VOG8647, VOG0514, VOG0226, VOG0322, VOG0535, VOG7341, VOG2228, VOG4552, VOG9667, VOG6495, VOG0862, VOG7656, VOG1849, VOG4662, VOG0275, VOG5378, VOG3325, VOG4156 |
Phigaro v2.4.0 (Database: Jan. 2024 release)