Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 1 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NHKHDAHO_187 | 7215 | 9134 | tet(W) | ARO:3000194 | tet(W) | 97.18 | 100.00 | AJ222769.3 |
| NHKHDAHO_122 | 1913 | 2650 | ErmB | ARO:3000375 | ErmB | 98.78 | 98.79 | AF242872.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| NHKHDAHO_122 | 1913 | 2650 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.86 | 100.00 | X72021 |
| NHKHDAHO_187 | 7215 | 9134 | tet(W) | Doxycycline, Tetracycline, Minocycline | 99.11 | 100.00 | FN396364 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NHKHDAHO_187 | 7215 | 9131 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | EXACTX | 100.00 | 100.00 | WP_000691721.1 |
| NHKHDAHO_122 | 1916 | 2650 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | BLASTX | 99.59 | 100.00 | WP_001038795.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| NHKHDAHO_41 | 48889 | 49083 | CspA | 1.00e-27 | cold shock protein | 81.54 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NHKHDAHO_2 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_3 | 1.0 | 0.0 | 1.0 |
| NHKHDAHO_4 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_5 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_6 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_7 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_8 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_9 | 1.0 | 0.0 | 1.0 |
| NHKHDAHO_11 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_12 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_13 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_15 | 1.0 | 0.0 | 1.0 |
| NHKHDAHO_16 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_19 | 1.0 | 0.0 | 1.0 |
| NHKHDAHO_20 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_21 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_22 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_23 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_24 | 1.0 | 0.0 | 1.0 |
| NHKHDAHO_25 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_26 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_28 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_30 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_31 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_32 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_34 | 1.0 | 0.0 | 1.0 |
| NHKHDAHO_37 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_38 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_39 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_40 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_41 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_42 | 1.0 | 0.0 | 1.0 |
| NHKHDAHO_43 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_45 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_47 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_49 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_50 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_51 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_52 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_53 | 1.0 | 0.0 | 1.0 |
| NHKHDAHO_54 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_55 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_58 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_59 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_60 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_64 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_65 | 1.0 | 0.0 | 1.0 |
| NHKHDAHO_67 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_68 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_70 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_71 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_73 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_74 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_76 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_77 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_78 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_79 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_80 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_81 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_83 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_84 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_85 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_86 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_87 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_88 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_91 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_92 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_93 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_95 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_96 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_97 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_98 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_102 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_104 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_108 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_109 | 1.0 | 0.0 | 1.0 |
| NHKHDAHO_110 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_111 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_112 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_113 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_114 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_115 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_116 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_117 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_118 | 1.0 | 0.0 | 1.0 |
| NHKHDAHO_119 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_120 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_122 | 1.0 | 0.0 | 1.0 |
| NHKHDAHO_123 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_124 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_125 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_126 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_127 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_129 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_130 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_131 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_135 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_136 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_137 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_138 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_139 | 1.0 | 0.0 | 1.0 |
| NHKHDAHO_140 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_141 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_143 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_144 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_145 | 1.0 | 0.0 | 1.0 |
| NHKHDAHO_147 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_148 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_149 | 1.0 | 0.0 | 1.0 |
| NHKHDAHO_151 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_153 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_156 | 1.0 | 0.0 | 1.0 |
| NHKHDAHO_158 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_161 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_163 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_164 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_165 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_166 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_167 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_168 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_169 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_170 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_171 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_172 | 1.0 | 0.0 | 1.0 |
| NHKHDAHO_173 | 1.0 | 0.0 | 1.0 |
| NHKHDAHO_175 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_176 | 1.0 | 0.0 | 1.0 |
| NHKHDAHO_177 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_178 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_179 | 1.0 | 0.0 | 1.0 |
| NHKHDAHO_180 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_181 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_182 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_183 | 1.0 | 0.0 | 1.0 |
| NHKHDAHO_184 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_186 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_187 | 1.0 | 0.0 | 1.0 |
| NHKHDAHO_189 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_190 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_191 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_192 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_193 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_194 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_195 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_196 | 1.0 | 0.0 | 1.0 |
| NHKHDAHO_197 | 0.0 | 1.0 | 0.0 |
| NHKHDAHO_199 | 1.0 | 0.0 | 1.0 |
| NHKHDAHO_201 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)