Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 1 | 1.41 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LCNIJAEL_74 | 4168 | 6093 | tet(W) | ARO:3000194 | tet(W) | 96.71 | 100.31 | AJ222769.3 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LCNIJAEL_74 | 4168 | 6080 | tet(W) | Doxycycline, Tetracycline, Minocycline | 98.95 | 99.64 | FN396364 |
| LCNIJAEL_38 | 6913 | 7398 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 98.97 | 64.41 | U48430 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LCNIJAEL_74 | 4168 | 6081 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 99.84 | 99.84 | WP_003672618.1 |
| LCNIJAEL_38 | 6916 | 7413 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | PARTIAL_CONTIG_ENDX | 94.15 | 68.40 | WP_011018369.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LCNIJAEL_39 | 25356 | 25162 | CspA | 9.75e-29 | cold shock protein | 84.61 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LCNIJAEL_1 | 0.0 | 1.0 | 0.0 |
| LCNIJAEL_2 | 0.0 | 1.0 | 0.0 |
| LCNIJAEL_3 | 0.0 | 1.0 | 0.0 |
| LCNIJAEL_6 | 1.0 | 0.0 | 1.0 |
| LCNIJAEL_7 | 0.0 | 1.0 | 0.0 |
| LCNIJAEL_8 | 1.0 | 0.0 | 1.0 |
| LCNIJAEL_9 | 0.0 | 1.0 | 0.0 |
| LCNIJAEL_11 | 0.0 | 1.0 | 0.0 |
| LCNIJAEL_12 | 0.0 | 1.0 | 0.0 |
| LCNIJAEL_13 | 0.0 | 1.0 | 0.0 |
| LCNIJAEL_14 | 1.0 | 0.0 | 1.0 |
| LCNIJAEL_15 | 0.0 | 1.0 | 0.0 |
| LCNIJAEL_16 | 1.0 | 0.0 | 1.0 |
| LCNIJAEL_17 | 0.0 | 1.0 | 0.0 |
| LCNIJAEL_18 | 1.0 | 0.0 | 1.0 |
| LCNIJAEL_20 | 1.0 | 0.0 | 1.0 |
| LCNIJAEL_21 | 0.0 | 1.0 | 0.0 |
| LCNIJAEL_23 | 0.0 | 1.0 | 0.0 |
| LCNIJAEL_24 | 0.0 | 1.0 | 0.0 |
| LCNIJAEL_25 | 0.0 | 1.0 | 0.0 |
| LCNIJAEL_26 | 0.0 | 1.0 | 0.0 |
| LCNIJAEL_27 | 0.0 | 1.0 | 0.0 |
| LCNIJAEL_28 | 0.0 | 1.0 | 0.0 |
| LCNIJAEL_29 | 1.0 | 0.0 | 1.0 |
| LCNIJAEL_30 | 0.0 | 1.0 | 0.0 |
| LCNIJAEL_31 | 0.0 | 1.0 | 0.0 |
| LCNIJAEL_32 | 0.0 | 1.0 | 0.0 |
| LCNIJAEL_33 | 0.0 | 1.0 | 0.0 |
| LCNIJAEL_34 | 0.0 | 1.0 | 0.0 |
| LCNIJAEL_35 | 0.0 | 1.0 | 0.0 |
| LCNIJAEL_37 | 1.0 | 0.0 | 1.0 |
| LCNIJAEL_38 | 1.0 | 0.0 | 1.0 |
| LCNIJAEL_39 | 0.0 | 1.0 | 0.0 |
| LCNIJAEL_41 | 0.0 | 1.0 | 0.0 |
| LCNIJAEL_42 | 1.0 | 0.0 | 1.0 |
| LCNIJAEL_43 | 0.0 | 1.0 | 0.0 |
| LCNIJAEL_47 | 0.0 | 1.0 | 0.0 |
| LCNIJAEL_48 | 0.0 | 1.0 | 0.0 |
| LCNIJAEL_50 | 1.0 | 0.0 | 1.0 |
| LCNIJAEL_51 | 0.0 | 1.0 | 0.0 |
| LCNIJAEL_52 | 0.0 | 1.0 | 0.0 |
| LCNIJAEL_53 | 0.0 | 1.0 | 0.0 |
| LCNIJAEL_54 | 0.0 | 1.0 | 0.0 |
| LCNIJAEL_55 | 0.0 | 1.0 | 0.0 |
| LCNIJAEL_57 | 0.0 | 1.0 | 0.0 |
| LCNIJAEL_58 | 0.0 | 1.0 | 0.0 |
| LCNIJAEL_59 | 0.0 | 1.0 | 0.0 |
| LCNIJAEL_60 | 0.0 | 1.0 | 0.0 |
| LCNIJAEL_62 | 1.0 | 0.0 | 1.0 |
| LCNIJAEL_63 | 1.0 | 0.0 | 1.0 |
| LCNIJAEL_64 | 1.0 | 0.0 | 1.0 |
| LCNIJAEL_65 | 0.0 | 1.0 | 0.0 |
| LCNIJAEL_67 | 1.0 | 0.0 | 1.0 |
| LCNIJAEL_70 | 0.0 | 1.0 | 0.0 |
| LCNIJAEL_71 | 1.0 | 0.0 | 1.0 |
| LCNIJAEL_73 | 0.0 | 1.0 | 0.0 |
| LCNIJAEL_74 | 0.0 | 1.0 | 0.0 |
| LCNIJAEL_75 | 0.0 | 1.0 | 0.0 |
| LCNIJAEL_77 | 0.0 | 1.0 | 0.0 |
| LCNIJAEL_78 | 0.0 | 1.0 | 0.0 |
| LCNIJAEL_81 | 1.0 | 0.0 | 1.0 |
| LCNIJAEL_82 | 0.0 | 1.0 | 0.0 |
| LCNIJAEL_83 | 0.0 | 1.0 | 0.0 |
| LCNIJAEL_84 | 0.0 | 1.0 | 0.0 |
| LCNIJAEL_85 | 0.0 | 1.0 | 0.0 |
| LCNIJAEL_86 | 0.0 | 1.0 | 0.0 |
| LCNIJAEL_87 | 0.0 | 1.0 | 0.0 |
| LCNIJAEL_88 | 0.0 | 1.0 | 0.0 |
| LCNIJAEL_90 | 0.0 | 1.0 | 0.0 |
| LCNIJAEL_91 | 0.0 | 1.0 | 0.0 |
| LCNIJAEL_93 | 0.0 | 1.0 | 0.0 |
| LCNIJAEL_94 | 0.0 | 1.0 | 0.0 |
| LCNIJAEL_95 | 0.0 | 1.0 | 0.0 |
| LCNIJAEL_96 | 0.0 | 1.0 | 0.0 |
| LCNIJAEL_97 | 0.0 | 1.0 | 0.0 |
| LCNIJAEL_98 | 0.0 | 1.0 | 0.0 |
| LCNIJAEL_99 | 0.0 | 1.0 | 0.0 |
| LCNIJAEL_102 | 0.0 | 1.0 | 0.0 |
| LCNIJAEL_103 | 0.0 | 1.0 | 0.0 |
| LCNIJAEL_104 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LCNIJAEL_16 | 6827 | 43932 | False | Siphoviridae | VOG4626, VOG9997, VOG0565, VOG10972, VOG3462, VOG0801, VOG0083, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG1886, VOG4581, VOG4841, VOG7352, VOG0195, VOG6793, VOG0198, VOG1183, VOG0195, VOG0275, VOG0536, VOG0189, VOG4799, VOG0226, VOG0283, VOG9708, VOG4552, VOG7581, VOG9667, VOG0862, VOG2540 |
Phigaro v2.4.0 (Database: Jan. 2024 release)