Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 1 | 5.10 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LEPFEHHG_22 | 5645 | 6508 | aadS | ARO:3004683 | aadS | 100.00 | 100.00 | M72415.1 |
| LEPFEHHG_22 | 4333 | 5469 | tet(X) | ARO:3000205 | tet(X) | 99.21 | 97.42 | M37699.1 |
| LEPFEHHG_22 | 2995 | 4134 | tet(X1) | ARO:3005166 | tet(X1) | 99.72 | 105.57 | AJ311171.1 |
| LEPFEHHG_22 | 1889 | 2689 | ErmF | ARO:3000498 | ErmF | 97.74 | 100.00 | M17124.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LEPFEHHG_22 | 1889 | 2689 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.88 | 100.00 | M62487 |
| LEPFEHHG_22 | 4303 | 5469 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.74 | 100.00 | M37699 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LEPFEHHG_22 | 5645 | 6505 | aadS | aminoglycoside 6-adenylyltransferase AadS | EXACTX | 100.00 | 100.00 | WP_003013318.1 |
| LEPFEHHG_18 | 55005 | 55910 | blaMUN-1 | MUN family extended-spectrum class A beta-lactamase MUN-1 | ALLELEX | 100.00 | 100.00 | WP_206340447.1 |
| LEPFEHHG_22 | 2995 | 4131 | tet(X1) | tetracycline-inactivating monooxygenase Tet(X1) | BLASTX | 99.74 | 100.00 | WP_204376222.1 |
| LEPFEHHG_22 | 4303 | 5466 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | BLASTX | 99.74 | 100.00 | WP_008651082.1 |
| LEPFEHHG_22 | 1892 | 2689 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 99.62 | 100.00 | WP_063844771.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LEPFEHHG_49 | 34850 | 36430 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 80.64 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LEPFEHHG_1 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_2 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_3 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_4 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_5 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_6 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_7 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_8 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_9 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_10 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_11 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_12 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_13 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_14 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_15 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_16 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_17 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_18 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_19 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_20 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_21 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_22 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_23 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_24 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_25 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_26 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_27 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_28 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_29 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_30 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_31 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_32 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_33 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_34 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_35 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_36 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_37 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_38 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_39 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_40 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_41 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_42 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_43 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_44 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_45 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_46 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_47 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_48 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_49 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_50 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_51 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_52 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_53 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_54 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_55 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_56 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_57 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_58 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_59 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_60 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_61 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_62 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_63 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_64 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_65 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_66 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_67 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_68 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_69 | 1.0 | 0.0 | 1.0 |
| LEPFEHHG_70 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_71 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_72 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_73 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_74 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_75 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_76 | 1.0 | 0.0 | 1.0 |
| LEPFEHHG_77 | 1.0 | 0.0 | 1.0 |
| LEPFEHHG_78 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_79 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_80 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_81 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_82 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_83 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_84 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_85 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_86 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_87 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_88 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_89 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_90 | 1.0 | 0.0 | 1.0 |
| LEPFEHHG_91 | 1.0 | 0.0 | 1.0 |
| LEPFEHHG_92 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_93 | 1.0 | 0.0 | 1.0 |
| LEPFEHHG_95 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_96 | 1.0 | 0.0 | 1.0 |
| LEPFEHHG_97 | 1.0 | 0.0 | 1.0 |
| LEPFEHHG_98 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_99 | 1.0 | 0.0 | 1.0 |
| LEPFEHHG_100 | 1.0 | 0.0 | 1.0 |
| LEPFEHHG_101 | 1.0 | 0.0 | 1.0 |
| LEPFEHHG_102 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_103 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_104 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_105 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_106 | 1.0 | 0.0 | 1.0 |
| LEPFEHHG_107 | 1.0 | 0.0 | 1.0 |
| LEPFEHHG_108 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_109 | 1.0 | 0.0 | 1.0 |
| LEPFEHHG_110 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_111 | 1.0 | 0.0 | 1.0 |
| LEPFEHHG_112 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_113 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_114 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_115 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_116 | 1.0 | 0.0 | 1.0 |
| LEPFEHHG_117 | 1.0 | 0.0 | 1.0 |
| LEPFEHHG_118 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_119 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_120 | 1.0 | 0.0 | 1.0 |
| LEPFEHHG_121 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_122 | 1.0 | 0.0 | 1.0 |
| LEPFEHHG_123 | 1.0 | 0.0 | 1.0 |
| LEPFEHHG_124 | 1.0 | 0.0 | 1.0 |
| LEPFEHHG_125 | 1.0 | 0.0 | 1.0 |
| LEPFEHHG_126 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_127 | 1.0 | 0.0 | 1.0 |
| LEPFEHHG_128 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_129 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_130 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_131 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_132 | 1.0 | 0.0 | 1.0 |
| LEPFEHHG_133 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_134 | 1.0 | 0.0 | 1.0 |
| LEPFEHHG_135 | 0.0 | 1.0 | 0.0 |
| LEPFEHHG_136 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)