Probiotic potential risk score


ARGs VFs PGs PPRS
0022.00

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes


Comprehensive Antibiotic Resistance Database (CARD)

Query ID Begin End ARO name ARO accession CARD name Identity Coverage Accession no.
No hit found

RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)

ResFinder

Query ID Begin End Resistance gene Phenotype Identity Coverage Accession no.
No hit found

ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)

AMRFinderPlus

Query ID Begin End Gene symbol Sequence name Method Identity Coverage Accession no.
No hit found

AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)

Virulence factors


Virulence Factor Database (VFDB)

Query ID qstart qend Gene name e-value VF name VF category Identity Coverage Accession no.
No hit found

BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)

VirulenceFinder

Query ID Begin End Database Virulence factor Protein function Identity Coverage Accession no.
No hit found

VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)

Pathogenic genes


PHI-base

Query ID qstart qend Gene name e-value Function Identity Coverage Gene ID
KMNEAPHJ_1284818248886WalR3.77e-115transcriptional regulatory protein84.25100.00EPH95667
KMNEAPHJ_1064883349027CspR8.96e-30cold shock protein84.6198.48AAO82613
KMNEAPHJ_1064883349030CspA1.37e-29cold shock protein84.85100.00CAA62903

BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)

Plasmid


PlasmidFinder

Query ID Begin End Plasmid Query / Template Identity Accession no.
KMNEAPHJ_2317521687rep28936 / 936100.00CP005948
KMNEAPHJ_24823303285repUS64959 / 95481.13JN601038

PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)

PlasmidHunter

Query ID Prediction Chromosome Plasmid
KMNEAPHJ_100.01.00.0
KMNEAPHJ_200.01.00.0
KMNEAPHJ_300.01.00.0
KMNEAPHJ_390.01.00.0
KMNEAPHJ_500.01.00.0
KMNEAPHJ_610.01.00.0
KMNEAPHJ_720.01.00.0
KMNEAPHJ_830.01.00.0
KMNEAPHJ_940.01.00.0
KMNEAPHJ_1050.01.00.0
KMNEAPHJ_1060.01.00.0
KMNEAPHJ_1170.01.00.0
KMNEAPHJ_1280.01.00.0
KMNEAPHJ_1390.01.00.0
KMNEAPHJ_1500.01.00.0
KMNEAPHJ_1610.01.00.0
KMNEAPHJ_1720.01.00.0
KMNEAPHJ_1830.01.00.0
KMNEAPHJ_1930.01.00.0
KMNEAPHJ_2040.01.00.0
KMNEAPHJ_2110.01.00.0
KMNEAPHJ_2120.01.00.0
KMNEAPHJ_2130.01.00.0
KMNEAPHJ_2140.01.00.0
KMNEAPHJ_2150.01.00.0
KMNEAPHJ_2160.01.00.0
KMNEAPHJ_2170.01.00.0
KMNEAPHJ_2180.01.00.0
KMNEAPHJ_2190.01.00.0
KMNEAPHJ_2200.01.00.0
KMNEAPHJ_2210.01.00.0
KMNEAPHJ_2220.01.00.0
KMNEAPHJ_2230.01.00.0
KMNEAPHJ_2241.00.01.0
KMNEAPHJ_2250.01.00.0
KMNEAPHJ_2261.00.01.0
KMNEAPHJ_2270.01.00.0
KMNEAPHJ_2280.01.00.0
KMNEAPHJ_2290.01.00.0
KMNEAPHJ_2301.00.01.0
KMNEAPHJ_2311.00.01.0
KMNEAPHJ_2320.01.00.0
KMNEAPHJ_2330.01.00.0
KMNEAPHJ_2340.01.00.0
KMNEAPHJ_2350.01.00.0
KMNEAPHJ_2361.00.01.0
KMNEAPHJ_2370.01.00.0
KMNEAPHJ_2380.01.00.0
KMNEAPHJ_2391.00.01.0
KMNEAPHJ_2401.00.01.0
KMNEAPHJ_2411.00.01.0
KMNEAPHJ_2421.00.01.0
KMNEAPHJ_2431.00.01.0
KMNEAPHJ_2440.01.00.0
KMNEAPHJ_2450.01.00.0
KMNEAPHJ_2461.00.01.0
KMNEAPHJ_2471.00.01.0
KMNEAPHJ_2481.00.01.0
KMNEAPHJ_2491.00.01.0
KMNEAPHJ_2500.01.00.0
KMNEAPHJ_2511.00.01.0
KMNEAPHJ_2531.00.01.0
KMNEAPHJ_2560.01.00.0
KMNEAPHJ_2571.00.01.0
KMNEAPHJ_2581.00.01.0
KMNEAPHJ_2591.00.01.0
KMNEAPHJ_2601.00.01.0
KMNEAPHJ_2610.01.00.0
KMNEAPHJ_2700.01.00.0
KMNEAPHJ_2810.01.00.0

PlasmidHunter v 1.4.5 (Database: May. 2024 release)

Prophage


Phigaro

Query ID Begin End Transposable Taxonomy pVOGs
KMNEAPHJ_204702138242FalseSiphoviridaeVOG0181, VOG7298, VOG1309, VOG0186, VOG4855, VOG0189, VOG4552, VOG4693, VOG0198, VOG3015, VOG0796, VOG4544, VOG0691, VOG0692, VOG4555, VOG4572, VOG0695, VOG0696, VOG0697, VOG0698, VOG9763, VOG0701, VOG0801, VOG4619, VOG5008
KMNEAPHJ_219177212068FalseSiphoviridaeVOG0204, VOG4568, VOG4556, VOG2935, VOG4544, VOG4581, VOG4841, VOG0205, VOG6414, VOG4609, VOG4632

Phigaro v2.4.0 (Database: Jan. 2024 release)


Insertion sequence (IS) elements