Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GCHPBGOG_35 | 27972 | 29945 | tet(Q) | ARO:3000191 | tet(Q) | 96.50 | 100.00 | Z21523.1 |
| GCHPBGOG_63 | 68 | 958 | CblA-1 | ARO:3002999 | CblA-1 | 98.99 | 100.00 | GQ343019.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GCHPBGOG_35 | 27972 | 29897 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.74 | 100.00 | L33696 |
| GCHPBGOG_60 | 222 | 1172 | cfxA3 | Ampicillin | 86.01 | 98.34 | AF472622 |
| GCHPBGOG_60 | 222 | 1172 | cfxA4 | Unknown Beta-lactam | 86.01 | 98.34 | AY769933 |
| GCHPBGOG_60 | 222 | 1172 | cfxA5 | Unknown Beta-lactam | 86.01 | 98.34 | AY769934 |
| GCHPBGOG_60 | 222 | 1172 | cfxA | Cefoxitin, Ampicillin | 86.01 | 98.34 | U38243 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GCHPBGOG_35 | 27975 | 29897 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.38 | 100.00 | WP_063856407.1 |
| GCHPBGOG_63 | 68 | 955 | cblA | CblA family class A beta-lactamase | BLASTX | 98.99 | 100.00 | WP_005827792.1 |
| GCHPBGOG_60 | 220 | 1173 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 83.65 | 99.07 | WP_004339683.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GCHPBGOG_1 | 0.0 | 1.0 | 0.0 |
| GCHPBGOG_2 | 0.0 | 1.0 | 0.0 |
| GCHPBGOG_3 | 0.0 | 1.0 | 0.0 |
| GCHPBGOG_4 | 0.0 | 1.0 | 0.0 |
| GCHPBGOG_5 | 0.0 | 1.0 | 0.0 |
| GCHPBGOG_6 | 0.0 | 1.0 | 0.0 |
| GCHPBGOG_7 | 0.0 | 1.0 | 0.0 |
| GCHPBGOG_8 | 0.0 | 1.0 | 0.0 |
| GCHPBGOG_9 | 0.0 | 1.0 | 0.0 |
| GCHPBGOG_10 | 0.0 | 1.0 | 0.0 |
| GCHPBGOG_11 | 0.0 | 1.0 | 0.0 |
| GCHPBGOG_12 | 0.0 | 1.0 | 0.0 |
| GCHPBGOG_13 | 0.0 | 1.0 | 0.0 |
| GCHPBGOG_14 | 0.0 | 1.0 | 0.0 |
| GCHPBGOG_15 | 0.0 | 1.0 | 0.0 |
| GCHPBGOG_16 | 0.0 | 1.0 | 0.0 |
| GCHPBGOG_17 | 0.0 | 1.0 | 0.0 |
| GCHPBGOG_18 | 0.0 | 1.0 | 0.0 |
| GCHPBGOG_19 | 0.0 | 1.0 | 0.0 |
| GCHPBGOG_20 | 0.0 | 1.0 | 0.0 |
| GCHPBGOG_21 | 0.0 | 1.0 | 0.0 |
| GCHPBGOG_22 | 0.0 | 1.0 | 0.0 |
| GCHPBGOG_23 | 0.0 | 1.0 | 0.0 |
| GCHPBGOG_24 | 0.0 | 1.0 | 0.0 |
| GCHPBGOG_25 | 0.0 | 1.0 | 0.0 |
| GCHPBGOG_26 | 0.0 | 1.0 | 0.0 |
| GCHPBGOG_27 | 0.0 | 1.0 | 0.0 |
| GCHPBGOG_28 | 0.0 | 1.0 | 0.0 |
| GCHPBGOG_29 | 0.0 | 1.0 | 0.0 |
| GCHPBGOG_30 | 0.0 | 1.0 | 0.0 |
| GCHPBGOG_31 | 0.0 | 1.0 | 0.0 |
| GCHPBGOG_32 | 0.0 | 1.0 | 0.0 |
| GCHPBGOG_33 | 0.0 | 1.0 | 0.0 |
| GCHPBGOG_34 | 0.0 | 1.0 | 0.0 |
| GCHPBGOG_35 | 0.0 | 1.0 | 0.0 |
| GCHPBGOG_36 | 0.0 | 1.0 | 0.0 |
| GCHPBGOG_37 | 0.0 | 1.0 | 0.0 |
| GCHPBGOG_38 | 0.0 | 1.0 | 0.0 |
| GCHPBGOG_39 | 0.0 | 1.0 | 0.0 |
| GCHPBGOG_40 | 0.0 | 1.0 | 0.0 |
| GCHPBGOG_41 | 0.0 | 1.0 | 0.0 |
| GCHPBGOG_42 | 1.0 | 0.0 | 1.0 |
| GCHPBGOG_43 | 0.0 | 1.0 | 0.0 |
| GCHPBGOG_44 | 0.0 | 1.0 | 0.0 |
| GCHPBGOG_45 | 0.0 | 1.0 | 0.0 |
| GCHPBGOG_46 | 0.0 | 1.0 | 0.0 |
| GCHPBGOG_47 | 1.0 | 0.0 | 1.0 |
| GCHPBGOG_48 | 0.0 | 1.0 | 0.0 |
| GCHPBGOG_49 | 0.0 | 1.0 | 0.0 |
| GCHPBGOG_50 | 1.0 | 0.0 | 1.0 |
| GCHPBGOG_51 | 0.0 | 1.0 | 0.0 |
| GCHPBGOG_52 | 0.0 | 1.0 | 0.0 |
| GCHPBGOG_53 | 0.0 | 1.0 | 0.0 |
| GCHPBGOG_54 | 0.0 | 1.0 | 0.0 |
| GCHPBGOG_55 | 0.0 | 1.0 | 0.0 |
| GCHPBGOG_56 | 0.0 | 1.0 | 0.0 |
| GCHPBGOG_57 | 1.0 | 0.0 | 1.0 |
| GCHPBGOG_58 | 0.0 | 1.0 | 0.0 |
| GCHPBGOG_59 | 1.0 | 0.0 | 1.0 |
| GCHPBGOG_60 | 0.0 | 1.0 | 0.0 |
| GCHPBGOG_61 | 0.0 | 1.0 | 0.0 |
| GCHPBGOG_62 | 0.0 | 1.0 | 0.0 |
| GCHPBGOG_63 | 0.0 | 1.0 | 0.0 |
| GCHPBGOG_64 | 1.0 | 0.0 | 1.0 |
| GCHPBGOG_65 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GCHPBGOG_7 | 28209 | 33064 | True | Unknown | VOG0275, |
Phigaro v2.4.0 (Database: Jan. 2024 release)