Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LJILPPHL_52 | 10741 | 12666 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| LJILPPHL_53 | 9870 | 10760 | CblA-1 | ARO:3002999 | CblA-1 | 98.99 | 100.00 | GQ343019.1 |
| LJILPPHL_68 | 1497 | 2462 | CfxA2 | ARO:3003002 | CfxA2 | 100.00 | 100.00 | AF118110.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LJILPPHL_68 | 1497 | 2462 | cfxA3 | Ampicillin | 99.90 | 100.00 | AF472622 |
| LJILPPHL_68 | 1497 | 2462 | cfxA4 | Unknown Beta-lactam | 99.90 | 100.00 | AY769933 |
| LJILPPHL_68 | 1497 | 2462 | cfxA5 | Unknown Beta-lactam | 99.90 | 100.00 | AY769934 |
| LJILPPHL_68 | 1497 | 2462 | cfxA | Cefoxitin, Ampicillin | 99.90 | 100.00 | U38243 |
| LJILPPHL_52 | 10741 | 12666 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LJILPPHL_68 | 1497 | 2459 | cfxA | CfxA family broad-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_004339683.1 |
| LJILPPHL_52 | 10741 | 12663 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| LJILPPHL_53 | 9873 | 10760 | cblA | CblA family class A beta-lactamase | BLASTX | 98.99 | 100.00 | WP_005827792.1 |
| LJILPPHL_20 | 59832 | 60785 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 83.65 | 99.07 | WP_004339683.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LJILPPHL_1 | 0.0 | 1.0 | 0.0 |
| LJILPPHL_2 | 0.0 | 1.0 | 0.0 |
| LJILPPHL_3 | 0.0 | 1.0 | 0.0 |
| LJILPPHL_4 | 0.0 | 1.0 | 0.0 |
| LJILPPHL_5 | 0.0 | 1.0 | 0.0 |
| LJILPPHL_6 | 0.0 | 1.0 | 0.0 |
| LJILPPHL_7 | 0.0 | 1.0 | 0.0 |
| LJILPPHL_8 | 0.0 | 1.0 | 0.0 |
| LJILPPHL_9 | 0.0 | 1.0 | 0.0 |
| LJILPPHL_10 | 0.0 | 1.0 | 0.0 |
| LJILPPHL_11 | 0.0 | 1.0 | 0.0 |
| LJILPPHL_12 | 0.0 | 1.0 | 0.0 |
| LJILPPHL_13 | 0.0 | 1.0 | 0.0 |
| LJILPPHL_14 | 0.0 | 1.0 | 0.0 |
| LJILPPHL_15 | 0.0 | 1.0 | 0.0 |
| LJILPPHL_16 | 0.0 | 1.0 | 0.0 |
| LJILPPHL_17 | 0.0 | 1.0 | 0.0 |
| LJILPPHL_18 | 0.0 | 1.0 | 0.0 |
| LJILPPHL_19 | 0.0 | 1.0 | 0.0 |
| LJILPPHL_20 | 0.0 | 1.0 | 0.0 |
| LJILPPHL_21 | 0.0 | 1.0 | 0.0 |
| LJILPPHL_22 | 1.0 | 0.0 | 1.0 |
| LJILPPHL_23 | 0.0 | 1.0 | 0.0 |
| LJILPPHL_24 | 0.0 | 1.0 | 0.0 |
| LJILPPHL_25 | 0.0 | 1.0 | 0.0 |
| LJILPPHL_26 | 0.0 | 1.0 | 0.0 |
| LJILPPHL_27 | 0.0 | 1.0 | 0.0 |
| LJILPPHL_28 | 0.0 | 1.0 | 0.0 |
| LJILPPHL_29 | 0.0 | 1.0 | 0.0 |
| LJILPPHL_30 | 0.0 | 1.0 | 0.0 |
| LJILPPHL_31 | 0.0 | 1.0 | 0.0 |
| LJILPPHL_32 | 0.0 | 1.0 | 0.0 |
| LJILPPHL_33 | 0.0 | 1.0 | 0.0 |
| LJILPPHL_34 | 0.0 | 1.0 | 0.0 |
| LJILPPHL_35 | 0.0 | 1.0 | 0.0 |
| LJILPPHL_36 | 0.0 | 1.0 | 0.0 |
| LJILPPHL_37 | 0.0 | 1.0 | 0.0 |
| LJILPPHL_38 | 0.0 | 1.0 | 0.0 |
| LJILPPHL_39 | 0.0 | 1.0 | 0.0 |
| LJILPPHL_40 | 0.0 | 1.0 | 0.0 |
| LJILPPHL_41 | 0.0 | 1.0 | 0.0 |
| LJILPPHL_42 | 0.0 | 1.0 | 0.0 |
| LJILPPHL_43 | 0.0 | 1.0 | 0.0 |
| LJILPPHL_44 | 0.0 | 1.0 | 0.0 |
| LJILPPHL_45 | 0.0 | 1.0 | 0.0 |
| LJILPPHL_46 | 0.0 | 1.0 | 0.0 |
| LJILPPHL_47 | 0.0 | 1.0 | 0.0 |
| LJILPPHL_48 | 0.0 | 1.0 | 0.0 |
| LJILPPHL_49 | 0.0 | 1.0 | 0.0 |
| LJILPPHL_50 | 0.0 | 1.0 | 0.0 |
| LJILPPHL_51 | 1.0 | 0.0 | 1.0 |
| LJILPPHL_52 | 0.0 | 1.0 | 0.0 |
| LJILPPHL_53 | 0.0 | 1.0 | 0.0 |
| LJILPPHL_54 | 1.0 | 0.0 | 1.0 |
| LJILPPHL_55 | 0.0 | 1.0 | 0.0 |
| LJILPPHL_56 | 0.0 | 1.0 | 0.0 |
| LJILPPHL_57 | 1.0 | 0.0 | 1.0 |
| LJILPPHL_58 | 1.0 | 0.0 | 1.0 |
| LJILPPHL_59 | 0.0 | 1.0 | 0.0 |
| LJILPPHL_60 | 0.0 | 1.0 | 0.0 |
| LJILPPHL_61 | 0.0 | 1.0 | 0.0 |
| LJILPPHL_62 | 0.0 | 1.0 | 0.0 |
| LJILPPHL_63 | 1.0 | 0.0 | 1.0 |
| LJILPPHL_64 | 0.0 | 1.0 | 0.0 |
| LJILPPHL_65 | 1.0 | 0.0 | 1.0 |
| LJILPPHL_66 | 0.0 | 1.0 | 0.0 |
| LJILPPHL_67 | 1.0 | 0.0 | 1.0 |
| LJILPPHL_68 | 0.0 | 1.0 | 0.0 |
| LJILPPHL_69 | 1.0 | 0.0 | 1.0 |
| LJILPPHL_70 | 0.0 | 1.0 | 0.0 |
| LJILPPHL_71 | 0.0 | 1.0 | 0.0 |
| LJILPPHL_72 | 0.0 | 1.0 | 0.0 |
| LJILPPHL_73 | 1.0 | 0.0 | 1.0 |
| LJILPPHL_74 | 1.0 | 0.0 | 1.0 |
| LJILPPHL_75 | 0.0 | 1.0 | 0.0 |
| LJILPPHL_76 | 1.0 | 0.0 | 1.0 |
| LJILPPHL_77 | 1.0 | 0.0 | 1.0 |
| LJILPPHL_78 | 0.0 | 1.0 | 0.0 |
| LJILPPHL_79 | 0.0 | 1.0 | 0.0 |
| LJILPPHL_80 | 1.0 | 0.0 | 1.0 |
| LJILPPHL_81 | 0.0 | 1.0 | 0.0 |
| LJILPPHL_82 | 0.0 | 1.0 | 0.0 |
| LJILPPHL_83 | 1.0 | 0.0 | 1.0 |
| LJILPPHL_84 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)