Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 1 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KOEEGCMD_59 | 28631 | 29596 | CfxA2 | ARO:3003002 | CfxA2 | 100.00 | 100.00 | AF118110.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| KOEEGCMD_59 | 28631 | 29596 | cfxA3 | Ampicillin | 99.90 | 100.00 | AF472622 |
| KOEEGCMD_59 | 28631 | 29596 | cfxA4 | Unknown Beta-lactam | 99.90 | 100.00 | AY769933 |
| KOEEGCMD_59 | 28631 | 29596 | cfxA5 | Unknown Beta-lactam | 99.90 | 100.00 | AY769934 |
| KOEEGCMD_59 | 28631 | 29596 | cfxA | Cefoxitin, Ampicillin | 99.90 | 100.00 | U38243 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KOEEGCMD_59 | 28634 | 29596 | cfxA | CfxA family broad-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_004339683.1 |
| KOEEGCMD_84 | 8971 | 9171 | vanU-G | glycopeptide resistance transcriptional regulator VanU-G | PARTIALX | 80.60 | 89.33 | WP_021418929.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| KOEEGCMD_25 | 50962 | 52542 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 80.64 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| KOEEGCMD_1 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_2 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_3 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_4 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_5 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_6 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_7 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_8 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_9 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_10 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_11 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_12 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_13 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_14 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_15 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_16 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_17 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_18 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_19 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_20 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_21 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_22 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_23 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_24 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_25 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_26 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_27 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_28 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_29 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_30 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_31 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_32 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_33 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_34 | 1.0 | 0.0 | 1.0 |
| KOEEGCMD_35 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_36 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_37 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_38 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_39 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_40 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_41 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_42 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_43 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_44 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_45 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_46 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_47 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_48 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_49 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_50 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_51 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_52 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_53 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_54 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_55 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_56 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_57 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_58 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_59 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_60 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_61 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_62 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_63 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_64 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_65 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_66 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_67 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_68 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_69 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_70 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_71 | 1.0 | 0.0 | 1.0 |
| KOEEGCMD_72 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_73 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_74 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_75 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_76 | 1.0 | 0.0 | 1.0 |
| KOEEGCMD_77 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_78 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_79 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_80 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_81 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_82 | 1.0 | 0.0 | 1.0 |
| KOEEGCMD_83 | 1.0 | 0.0 | 1.0 |
| KOEEGCMD_84 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_85 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_86 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_87 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_88 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_89 | 1.0 | 0.0 | 1.0 |
| KOEEGCMD_90 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_91 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_92 | 1.0 | 0.0 | 1.0 |
| KOEEGCMD_93 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_94 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_95 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_96 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_97 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_98 | 1.0 | 0.0 | 1.0 |
| KOEEGCMD_99 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_100 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_101 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_102 | 1.0 | 0.0 | 1.0 |
| KOEEGCMD_103 | 1.0 | 0.0 | 1.0 |
| KOEEGCMD_104 | 1.0 | 0.0 | 1.0 |
| KOEEGCMD_105 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_106 | 1.0 | 0.0 | 1.0 |
| KOEEGCMD_107 | 1.0 | 0.0 | 1.0 |
| KOEEGCMD_108 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_109 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_110 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_111 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_112 | 1.0 | 0.0 | 1.0 |
| KOEEGCMD_113 | 1.0 | 0.0 | 1.0 |
| KOEEGCMD_114 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_115 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_116 | 1.0 | 0.0 | 1.0 |
| KOEEGCMD_117 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_118 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_119 | 1.0 | 0.0 | 1.0 |
| KOEEGCMD_120 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_121 | 1.0 | 0.0 | 1.0 |
| KOEEGCMD_122 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_123 | 1.0 | 0.0 | 1.0 |
| KOEEGCMD_124 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_125 | 1.0 | 0.0 | 1.0 |
| KOEEGCMD_126 | 1.0 | 0.0 | 1.0 |
| KOEEGCMD_127 | 1.0 | 0.0 | 1.0 |
| KOEEGCMD_128 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_129 | 1.0 | 0.0 | 1.0 |
| KOEEGCMD_130 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_131 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_132 | 1.0 | 0.0 | 1.0 |
| KOEEGCMD_133 | 1.0 | 0.0 | 1.0 |
| KOEEGCMD_134 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_135 | 1.0 | 0.0 | 1.0 |
| KOEEGCMD_136 | 1.0 | 0.0 | 1.0 |
| KOEEGCMD_137 | 0.0 | 1.0 | 0.0 |
| KOEEGCMD_138 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| KOEEGCMD_11 | 14011 | 28314 | False | Unknown | VOG0572, |
| KOEEGCMD_23 | 31164 | 73295 | True | Siphoviridae | VOG0443, |
Phigaro v2.4.0 (Database: Jan. 2024 release)