Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HCFLMOBG_2 | 181972 | 182535 | lnuC | ARO:3002837 | lnuC | 98.17 | 114.02 | AY928180.1 |
| HCFLMOBG_39 | 18014 | 19234 | tet(40) | ARO:3000567 | tet(40) | 99.26 | 100.00 | AM419751.1 |
| HCFLMOBG_39 | 19285 | 20493 | tet(O) | ARO:3000190 | tet(O) | 90.30 | 62.91 | M18896.2 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| HCFLMOBG_39 | 18014 | 19234 | tet(40) | Doxycycline, Tetracycline | 99.75 | 100.00 | AM419751 |
| HCFLMOBG_2 | 181972 | 182466 | lnu(C) | Lincomycin | 99.19 | 100.00 | AY928180 |
| HCFLMOBG_39 | 19285 | 20494 | tet(O/32/O) | Doxycycline, Tetracycline, Minocycline | 99.75 | 63.02 | AIOQ01000025 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HCFLMOBG_39 | 18017 | 19234 | tet(40) | tetracycline efflux MFS transporter Tet(40) | BLASTX | 99.51 | 100.00 | WP_015573055.1 |
| HCFLMOBG_2 | 181975 | 182466 | lnu(C) | lincosamide nucleotidyltransferase Lnu(C) | BLASTX | 98.17 | 100.00 | WP_063851341.1 |
| HCFLMOBG_39 | 19288 | 20493 | tet(O/32/O) | tetracycline resistance ribosomal protection mosaic protein Tet(O/32/O) | PARTIAL_CONTIG_ENDX | 90.80 | 62.91 | WP_015573056.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HCFLMOBG_1 | 0.0 | 1.0 | 0.0 |
| HCFLMOBG_2 | 0.0 | 1.0 | 0.0 |
| HCFLMOBG_3 | 0.0 | 1.0 | 0.0 |
| HCFLMOBG_4 | 0.0 | 1.0 | 0.0 |
| HCFLMOBG_5 | 0.0 | 1.0 | 0.0 |
| HCFLMOBG_6 | 0.0 | 1.0 | 0.0 |
| HCFLMOBG_7 | 0.0 | 1.0 | 0.0 |
| HCFLMOBG_8 | 0.0 | 1.0 | 0.0 |
| HCFLMOBG_9 | 0.0 | 1.0 | 0.0 |
| HCFLMOBG_10 | 0.0 | 1.0 | 0.0 |
| HCFLMOBG_11 | 0.0 | 1.0 | 0.0 |
| HCFLMOBG_12 | 0.0 | 1.0 | 0.0 |
| HCFLMOBG_13 | 0.0 | 1.0 | 0.0 |
| HCFLMOBG_14 | 0.0 | 1.0 | 0.0 |
| HCFLMOBG_15 | 0.0 | 1.0 | 0.0 |
| HCFLMOBG_16 | 0.0 | 1.0 | 0.0 |
| HCFLMOBG_17 | 0.0 | 1.0 | 0.0 |
| HCFLMOBG_18 | 0.0 | 1.0 | 0.0 |
| HCFLMOBG_19 | 0.0 | 1.0 | 0.0 |
| HCFLMOBG_20 | 0.0 | 1.0 | 0.0 |
| HCFLMOBG_21 | 0.0 | 1.0 | 0.0 |
| HCFLMOBG_22 | 0.0 | 1.0 | 0.0 |
| HCFLMOBG_23 | 0.0 | 1.0 | 0.0 |
| HCFLMOBG_24 | 0.0 | 1.0 | 0.0 |
| HCFLMOBG_25 | 0.0 | 1.0 | 0.0 |
| HCFLMOBG_26 | 0.0 | 1.0 | 0.0 |
| HCFLMOBG_27 | 0.0 | 1.0 | 0.0 |
| HCFLMOBG_28 | 0.0 | 1.0 | 0.0 |
| HCFLMOBG_29 | 0.0 | 1.0 | 0.0 |
| HCFLMOBG_30 | 0.0 | 1.0 | 0.0 |
| HCFLMOBG_31 | 0.0 | 1.0 | 0.0 |
| HCFLMOBG_32 | 0.0 | 1.0 | 0.0 |
| HCFLMOBG_33 | 0.0 | 1.0 | 0.0 |
| HCFLMOBG_34 | 0.0 | 1.0 | 0.0 |
| HCFLMOBG_35 | 0.0 | 1.0 | 0.0 |
| HCFLMOBG_36 | 0.0 | 1.0 | 0.0 |
| HCFLMOBG_37 | 0.0 | 1.0 | 0.0 |
| HCFLMOBG_38 | 0.0 | 1.0 | 0.0 |
| HCFLMOBG_39 | 0.0 | 1.0 | 0.0 |
| HCFLMOBG_40 | 0.0 | 1.0 | 0.0 |
| HCFLMOBG_41 | 0.0 | 1.0 | 0.0 |
| HCFLMOBG_42 | 0.0 | 1.0 | 0.0 |
| HCFLMOBG_43 | 1.0 | 0.0 | 1.0 |
| HCFLMOBG_44 | 0.0 | 1.0 | 0.0 |
| HCFLMOBG_45 | 0.0 | 1.0 | 0.0 |
| HCFLMOBG_46 | 0.0 | 1.0 | 0.0 |
| HCFLMOBG_47 | 0.0 | 1.0 | 0.0 |
| HCFLMOBG_48 | 0.0 | 1.0 | 0.0 |
| HCFLMOBG_49 | 0.0 | 1.0 | 0.0 |
| HCFLMOBG_50 | 0.0 | 1.0 | 0.0 |
| HCFLMOBG_51 | 0.0 | 1.0 | 0.0 |
| HCFLMOBG_52 | 1.0 | 0.0 | 1.0 |
| HCFLMOBG_53 | 0.0 | 1.0 | 0.0 |
| HCFLMOBG_54 | 0.0 | 1.0 | 0.0 |
| HCFLMOBG_55 | 0.0 | 1.0 | 0.0 |
| HCFLMOBG_56 | 0.0 | 1.0 | 0.0 |
| HCFLMOBG_57 | 0.0 | 1.0 | 0.0 |
| HCFLMOBG_58 | 0.0 | 1.0 | 0.0 |
| HCFLMOBG_59 | 0.0 | 1.0 | 0.0 |
| HCFLMOBG_60 | 0.0 | 1.0 | 0.0 |
| HCFLMOBG_61 | 0.0 | 1.0 | 0.0 |
| HCFLMOBG_62 | 1.0 | 0.0 | 1.0 |
| HCFLMOBG_63 | 1.0 | 0.0 | 1.0 |
| HCFLMOBG_64 | 0.0 | 1.0 | 0.0 |
| HCFLMOBG_65 | 0.0 | 1.0 | 0.0 |
| HCFLMOBG_66 | 0.0 | 1.0 | 0.0 |
| HCFLMOBG_67 | 1.0 | 0.0 | 1.0 |
| HCFLMOBG_68 | 0.0 | 1.0 | 0.0 |
| HCFLMOBG_69 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HCFLMOBG_38 | 6329 | 15060 | False | Siphoviridae | VOG9315, |
Phigaro v2.4.0 (Database: Jan. 2024 release)