Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CGDJAKNJ_3 | 137930 | 138820 | CblA-1 | ARO:3002999 | CblA-1 | 98.99 | 100.00 | GQ343019.1 |
| CGDJAKNJ_23 | 55919 | 56884 | CfxA2 | ARO:3003002 | CfxA2 | 100.00 | 100.00 | AF118110.1 |
| CGDJAKNJ_13 | 30495 | 31700 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CGDJAKNJ_23 | 55919 | 56884 | cfxA3 | Ampicillin | 99.90 | 100.00 | AF472622 |
| CGDJAKNJ_23 | 55919 | 56884 | cfxA4 | Unknown Beta-lactam | 99.90 | 100.00 | AY769933 |
| CGDJAKNJ_23 | 55919 | 56884 | cfxA5 | Unknown Beta-lactam | 99.90 | 100.00 | AY769934 |
| CGDJAKNJ_23 | 55919 | 56884 | cfxA | Cefoxitin, Ampicillin | 99.90 | 100.00 | U38243 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CGDJAKNJ_23 | 55919 | 56881 | cfxA | CfxA family broad-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_004339683.1 |
| CGDJAKNJ_13 | 30498 | 31700 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
| CGDJAKNJ_3 | 137930 | 138817 | cblA | CblA family class A beta-lactamase | BLASTX | 98.99 | 100.00 | WP_005827792.1 |
| CGDJAKNJ_13 | 29997 | 30470 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | BLASTX | 98.10 | 92.94 | WP_004308783.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CGDJAKNJ_1 | 0.0 | 1.0 | 0.0 |
| CGDJAKNJ_2 | 0.0 | 1.0 | 0.0 |
| CGDJAKNJ_3 | 0.0 | 1.0 | 0.0 |
| CGDJAKNJ_4 | 0.0 | 1.0 | 0.0 |
| CGDJAKNJ_5 | 0.0 | 1.0 | 0.0 |
| CGDJAKNJ_6 | 0.0 | 1.0 | 0.0 |
| CGDJAKNJ_7 | 0.0 | 1.0 | 0.0 |
| CGDJAKNJ_8 | 0.0 | 1.0 | 0.0 |
| CGDJAKNJ_9 | 0.0 | 1.0 | 0.0 |
| CGDJAKNJ_10 | 0.0 | 1.0 | 0.0 |
| CGDJAKNJ_11 | 0.0 | 1.0 | 0.0 |
| CGDJAKNJ_12 | 0.0 | 1.0 | 0.0 |
| CGDJAKNJ_13 | 0.0 | 1.0 | 0.0 |
| CGDJAKNJ_14 | 0.0 | 1.0 | 0.0 |
| CGDJAKNJ_15 | 0.0 | 1.0 | 0.0 |
| CGDJAKNJ_16 | 0.0 | 1.0 | 0.0 |
| CGDJAKNJ_17 | 0.0 | 1.0 | 0.0 |
| CGDJAKNJ_18 | 0.0 | 1.0 | 0.0 |
| CGDJAKNJ_19 | 0.0 | 1.0 | 0.0 |
| CGDJAKNJ_20 | 0.0 | 1.0 | 0.0 |
| CGDJAKNJ_21 | 0.0 | 1.0 | 0.0 |
| CGDJAKNJ_22 | 0.0 | 1.0 | 0.0 |
| CGDJAKNJ_23 | 0.0 | 1.0 | 0.0 |
| CGDJAKNJ_24 | 0.0 | 1.0 | 0.0 |
| CGDJAKNJ_25 | 0.0 | 1.0 | 0.0 |
| CGDJAKNJ_26 | 0.0 | 1.0 | 0.0 |
| CGDJAKNJ_27 | 0.0 | 1.0 | 0.0 |
| CGDJAKNJ_28 | 0.0 | 1.0 | 0.0 |
| CGDJAKNJ_29 | 0.0 | 1.0 | 0.0 |
| CGDJAKNJ_30 | 0.0 | 1.0 | 0.0 |
| CGDJAKNJ_31 | 0.0 | 1.0 | 0.0 |
| CGDJAKNJ_32 | 0.0 | 1.0 | 0.0 |
| CGDJAKNJ_33 | 0.0 | 1.0 | 0.0 |
| CGDJAKNJ_34 | 0.0 | 1.0 | 0.0 |
| CGDJAKNJ_35 | 0.0 | 1.0 | 0.0 |
| CGDJAKNJ_36 | 0.0 | 1.0 | 0.0 |
| CGDJAKNJ_37 | 0.0 | 1.0 | 0.0 |
| CGDJAKNJ_38 | 0.0 | 1.0 | 0.0 |
| CGDJAKNJ_39 | 0.0 | 1.0 | 0.0 |
| CGDJAKNJ_40 | 0.0 | 1.0 | 0.0 |
| CGDJAKNJ_41 | 0.0 | 1.0 | 0.0 |
| CGDJAKNJ_42 | 0.0 | 1.0 | 0.0 |
| CGDJAKNJ_43 | 0.0 | 1.0 | 0.0 |
| CGDJAKNJ_44 | 0.0 | 1.0 | 0.0 |
| CGDJAKNJ_45 | 0.0 | 1.0 | 0.0 |
| CGDJAKNJ_46 | 0.0 | 1.0 | 0.0 |
| CGDJAKNJ_47 | 0.0 | 1.0 | 0.0 |
| CGDJAKNJ_48 | 0.0 | 1.0 | 0.0 |
| CGDJAKNJ_49 | 0.0 | 1.0 | 0.0 |
| CGDJAKNJ_50 | 0.0 | 1.0 | 0.0 |
| CGDJAKNJ_51 | 0.0 | 1.0 | 0.0 |
| CGDJAKNJ_52 | 0.0 | 1.0 | 0.0 |
| CGDJAKNJ_53 | 0.0 | 1.0 | 0.0 |
| CGDJAKNJ_54 | 0.0 | 1.0 | 0.0 |
| CGDJAKNJ_55 | 0.0 | 1.0 | 0.0 |
| CGDJAKNJ_56 | 1.0 | 0.0 | 1.0 |
| CGDJAKNJ_57 | 1.0 | 0.0 | 1.0 |
| CGDJAKNJ_58 | 0.0 | 1.0 | 0.0 |
| CGDJAKNJ_59 | 1.0 | 0.0 | 1.0 |
| CGDJAKNJ_60 | 1.0 | 0.0 | 1.0 |
| CGDJAKNJ_61 | 1.0 | 0.0 | 1.0 |
| CGDJAKNJ_62 | 1.0 | 0.0 | 1.0 |
| CGDJAKNJ_63 | 1.0 | 0.0 | 1.0 |
| CGDJAKNJ_64 | 1.0 | 0.0 | 1.0 |
| CGDJAKNJ_65 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CGDJAKNJ_34 | 21976 | 35042 | False | Unknown | VOG0572, |
Phigaro v2.4.0 (Database: Jan. 2024 release)