Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 1 | 1.41 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GBNPJICA_3 | 69095 | 69832 | ErmB | ARO:3000375 | ErmB | 97.96 | 98.79 | AF242872.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GBNPJICA_3 | 69095 | 69832 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.73 | 100.00 | U18931 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GBNPJICA_3 | 69095 | 69829 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | BLASTX | 99.18 | 100.00 | WP_002292226.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| GBNPJICA_89 | 5022 | 3442 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 80.64 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GBNPJICA_1 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_2 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_3 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_4 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_5 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_6 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_7 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_8 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_9 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_10 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_11 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_12 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_13 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_14 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_15 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_16 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_17 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_18 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_19 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_20 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_21 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_22 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_23 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_24 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_25 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_26 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_27 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_28 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_29 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_30 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_31 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_32 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_33 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_34 | 1.0 | 0.0 | 1.0 |
| GBNPJICA_35 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_36 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_37 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_38 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_39 | 1.0 | 0.0 | 1.0 |
| GBNPJICA_40 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_41 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_42 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_43 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_44 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_45 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_46 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_47 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_48 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_49 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_50 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_51 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_52 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_53 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_54 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_55 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_56 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_57 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_58 | 1.0 | 0.0 | 1.0 |
| GBNPJICA_59 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_60 | 1.0 | 0.0 | 1.0 |
| GBNPJICA_61 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_62 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_63 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_64 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_65 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_66 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_67 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_68 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_69 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_70 | 1.0 | 0.0 | 1.0 |
| GBNPJICA_71 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_72 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_73 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_74 | 1.0 | 0.0 | 1.0 |
| GBNPJICA_75 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_76 | 1.0 | 0.0 | 1.0 |
| GBNPJICA_77 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_78 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_79 | 1.0 | 0.0 | 1.0 |
| GBNPJICA_80 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_81 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_82 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_83 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_84 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_85 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_86 | 1.0 | 0.0 | 1.0 |
| GBNPJICA_87 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_88 | 1.0 | 0.0 | 1.0 |
| GBNPJICA_89 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_90 | 1.0 | 0.0 | 1.0 |
| GBNPJICA_91 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_92 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_93 | 1.0 | 0.0 | 1.0 |
| GBNPJICA_94 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_95 | 1.0 | 0.0 | 1.0 |
| GBNPJICA_96 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_97 | 1.0 | 0.0 | 1.0 |
| GBNPJICA_98 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_99 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_100 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_101 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_102 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_103 | 1.0 | 0.0 | 1.0 |
| GBNPJICA_104 | 1.0 | 0.0 | 1.0 |
| GBNPJICA_105 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_106 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_107 | 1.0 | 0.0 | 1.0 |
| GBNPJICA_108 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_109 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_110 | 1.0 | 0.0 | 1.0 |
| GBNPJICA_111 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_112 | 1.0 | 0.0 | 1.0 |
| GBNPJICA_113 | 1.0 | 0.0 | 1.0 |
| GBNPJICA_114 | 1.0 | 0.0 | 1.0 |
| GBNPJICA_115 | 1.0 | 0.0 | 1.0 |
| GBNPJICA_116 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_117 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_118 | 1.0 | 0.0 | 1.0 |
| GBNPJICA_119 | 1.0 | 0.0 | 1.0 |
| GBNPJICA_120 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_121 | 1.0 | 0.0 | 1.0 |
| GBNPJICA_122 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_123 | 1.0 | 0.0 | 1.0 |
| GBNPJICA_124 | 1.0 | 0.0 | 1.0 |
| GBNPJICA_125 | 0.0 | 1.0 | 0.0 |
| GBNPJICA_126 | 1.0 | 0.0 | 1.0 |
| GBNPJICA_127 | 1.0 | 0.0 | 1.0 |
| GBNPJICA_128 | 1.0 | 0.0 | 1.0 |
| GBNPJICA_129 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GBNPJICA_3 | 42012 | 50260 | True | Siphoviridae | VOG0992, |
Phigaro v2.4.0 (Database: Jan. 2024 release)