Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PJBGFKIG_2 | 8445 | 9089 | vatE | ARO:3002844 | vatE | 100.00 | 100.00 | AF242872.1 |
| PJBGFKIG_3 | 6883 | 8802 | tet(W) | ARO:3000194 | tet(W) | 92.48 | 100.00 | AJ222769.3 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PJBGFKIG_2 | 8445 | 9089 | vat(E) | Dalfopristin, Pristinamycin IIA, Virginiamycin M | 100.00 | 100.00 | AJ488494 |
| PJBGFKIG_3 | 6883 | 8787 | tet(O/W/O)-2 | Doxycycline, Tetracycline, Minocycline | 89.10 | 99.01 | AY196920 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PJBGFKIG_2 | 8448 | 9089 | vat(E) | streptogramin A O-acetyltransferase Vat(E) | EXACTX | 100.00 | 100.00 | WP_002328813.1 |
| PJBGFKIG_3 | 6883 | 8796 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 94.51 | 99.84 | WP_003672618.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| PJBGFKIG_1 | 57128 | 58166 | repUS67 | 1040 / 1039 | 95.77 | CP006012 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PJBGFKIG_1 | 1.0 | 0.0 | 1.0 |
| PJBGFKIG_2 | 1.0 | 0.0 | 1.0 |
| PJBGFKIG_3 | 1.0 | 0.0 | 1.0 |
| PJBGFKIG_4 | 0.0 | 1.0 | 0.0 |
| PJBGFKIG_5 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PJBGFKIG_4 | 750744 | 778099 | False | Siphoviridae | VOG0703, VOG0641, VOG9888, VOG4887, VOG4205, VOG3463, VOG3462, VOG0801, VOG6163, VOG0209, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG1886, VOG0866, VOG9312, VOG4581, VOG4841, VOG0866, VOG0198 |
| PJBGFKIG_4 | 840407 | 872567 | False | Siphoviridae | VOG4824, VOG0703, VOG8917, VOG0648, VOG9888, VOG10608, VOG1335, VOG6163, VOG1334, VOG1333, VOG4634, VOG0704, VOG1900, VOG1330, VOG4713, VOG1887, VOG3434, VOG4555, VOG4564, VOG0720, VOG4544, VOG0796, VOG9503, VOG0689, VOG0686, VOG0198, VOG4693, VOG4693, VOG1183, VOG3307 |
| PJBGFKIG_4 | 879809 | 886217 | False | Siphoviridae | VOG9667, VOG4602, VOG2401, VOG10073, VOG3557, VOG0047, VOG0682, VOG3459 |
| PJBGFKIG_5 | 1088 | 8684 | False | Siphoviridae | VOG0724, VOG0799, VOG0725, VOG0800, VOG4545, VOG4633 |
| PJBGFKIG_5 | 338101 | 350667 | False | Myoviridae / Siphoviridae | VOG0321, VOG4548, VOG0322, VOG6545, VOG4632, VOG4609, VOG0327, VOG6495, VOG3307, VOG0198, VOG5339, VOG0796, VOG10227 |
Phigaro v2.4.0 (Database: Jan. 2024 release)