Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 11 | 10 | 4 | 15.39 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| BDNCHBAC_1 | 3160897 | 3162066 | bmr | ARO:3003007 | bmr | 99.74 | 100.00 | M33768.1 |
| BDNCHBAC_1 | 2920270 | 2921124 | aadK | ARO:3002627 | aadK | 100.00 | 100.00 | AL009126.1 |
| BDNCHBAC_1 | 1129030 | 1129950 | mphK | ARO:3004541 | mphK | 97.71 | 100.00 | CP010314.1 |
| BDNCHBAC_1 | 1115705 | 1117138 | lmrB | ARO:3002813 | lmrB | 99.37 | 100.00 | JYFL01000006.1 |
| BDNCHBAC_1 | 1066024 | 1066617 | tmrB | ARO:3003059 | tmrB | 98.48 | 100.00 | AL009126.3 |
| BDNCHBAC_1 | 819541 | 821184 | vmlR | ARO:3004476 | vmlR | 100.00 | 100.00 | NC_000964.3 |
| BDNCHBAC_1 | 528690 | 531260 | Bacillus subtilis mprF | ARO:3003324 | Bsub_mprF | 100.00 | 100.00 | AL009126.3 |
| BDNCHBAC_1 | 72337 | 72675 | ykkC | ARO:3003063 | ykkC | 100.00 | 100.00 | AL009126.1 |
| BDNCHBAC_1 | 72020 | 72337 | ykkD | ARO:3003064 | ykkD | 99.05 | 100.00 | AL009126.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| BDNCHBAC_1 | 2920270 | 2921124 | aadK | Streptomycin | 100.00 | 100.00 | M26879 |
| BDNCHBAC_1 | 1430529 | 1431905 | tet(L) | Doxycycline, Tetracycline, Doxycycline, Tetracycline, Minocycline, Tigecycline | 100.00 | 100.00 | X08034 |
| BDNCHBAC_1 | 1129030 | 1129950 | mph(K) | Spiramycin, Telithromycin | 97.72 | 100.00 | NC_000964 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| BDNCHBAC_1 | 2920270 | 2921121 | aadK | aminoglycoside 6-adenylyltransferase AadK | EXACTX | 100.00 | 100.00 | WP_003229862.1 |
| BDNCHBAC_1 | 1430529 | 1431902 | tet(L) | tetracycline efflux MFS transporter Tet(L) | EXACTX | 100.00 | 100.00 | WP_003242953.1 |
| BDNCHBAC_1 | 819541 | 821181 | vmlR | ABC-F type ribosomal protection protein VmlR | EXACTX | 100.00 | 100.00 | WP_003234144.1 |
| BDNCHBAC_1 | 1129033 | 1129950 | mphK | macrolide 2'-phosphotransferase MphK | BLASTX | 97.71 | 100.00 | WP_003246254.1 |
| BDNCHBAC_1 | 1433846 | 1434364 | satA | streptothricin N-acetyltransferase SatA | BLASTX | 90.75 | 100.00 | WP_003242546.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| BDNCHBAC_1 | 1918018 | 1919199 | capB | 0.0 | Capsule | Immune modulation | 100.00 | 100.00 | NP_391471 |
| BDNCHBAC_1 | 1919214 | 1919663 | capC | 0.0 | Capsule | Immune modulation | 100.00 | 100.00 | NP_391470 |
| BDNCHBAC_1 | 3515779 | 3517542 | dep/capD | 0.0 | Capsule | Immune modulation | 100.00 | 100.00 | NP_389723 |
| BDNCHBAC_1 | 2326306 | 2327091 | dhbA | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 100.00 | 100.00 | NP_391080 |
| BDNCHBAC_1 | 3360745 | 3361386 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 100.00 | 100.00 | NP_390062 |
| BDNCHBAC_1 | 1919682 | 1920823 | capA | 0.0 | Capsule | Immune modulation | 99.91 | 99.91 | NP_391469 |
| BDNCHBAC_1 | 2329989 | 2330927 | dhbB | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.89 | 100.00 | NP_391077 |
| BDNCHBAC_1 | 2327117 | 2328313 | dhbC | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.67 | 100.00 | NP_391079 |
| BDNCHBAC_1 | 2328342 | 2329961 | dhbE | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.57 | 100.00 | NP_391078 |
| BDNCHBAC_1 | 2330947 | 2338082 | dhbF | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.57 | 99.99 | NP_391076 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| BDNCHBAC_1 | 1272901 | 1271765 | tufA | 0.0 | elongation factor Tu | 84.96 | 95.69 | AHM69299 |
| BDNCHBAC_1 | 1386706 | 1385837 | pdxS | 3.06e-149 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| BDNCHBAC_1 | 3832051 | 3831275 | CodY | 3.34e-124 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| BDNCHBAC_1 | 2072403 | 2071834 | ClpP | 2.48e-98 | part of proteolytic complex | 81.05 | 97.44 | BAB94595 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| BDNCHBAC_1 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| BDNCHBAC_1 | 102147 | 128217 | False | Myoviridae | VOG0753, VOG4705, VOG7718, VOG4862, VOG4691, VOG4550, VOG3894, VOG4885, VOG4865, VOG4865, VOG6163, VOG4282, VOG6163, VOG3892, VOG3891, VOG3890, VOG0749, VOG4685, VOG4773, VOG10227, VOG9315, VOG0796, VOG5447, VOG4861, VOG0189, VOG3490, VOG9667 |
| BDNCHBAC_1 | 2839009 | 2862979 | False | Siphoviridae | VOG0531, VOG4841, VOG0713, VOG4581, VOG1886, VOG3607, VOG4556, VOG4568, VOG4553, VOG5361, VOG0204, VOG9583, VOG0704, VOG4586, VOG0541, VOG5910, VOG0801, VOG4772, VOG4660, VOG4660, VOG4612, VOG4612, VOG3390, VOG4705, VOG0641, VOG4574 |
| BDNCHBAC_1 | 2959500 | 2989740 | False | Myoviridae | VOG4600, VOG1309, VOG11060, VOG0189, VOG4693, VOG9587, VOG4673, VOG8642, VOG0796, VOG10227, VOG4773, VOG4688, VOG4685, VOG0749, VOG4589, VOG4870, VOG10055, VOG3890, VOG3891, VOG3892, VOG6163, VOG4865, VOG4865, VOG4885, VOG3894, VOG4550, VOG4691, VOG4862, VOG7718 |
Phigaro v2.4.0 (Database: Jan. 2024 release)