Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| ICEJKCOP_3 | 58126 | 58830 | WalR | 1.47e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| ICEJKCOP_30 | 13958 | 14155 | CspR | 4.37e-34 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| ICEJKCOP_20 | 50105 | 51166 | repUS74 | 1062 / 1062 | 99.72 | CP000424 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| ICEJKCOP_1 | 0.0 | 1.0 | 0.0 |
| ICEJKCOP_2 | 0.0 | 1.0 | 0.0 |
| ICEJKCOP_3 | 0.0 | 1.0 | 0.0 |
| ICEJKCOP_4 | 0.0 | 1.0 | 0.0 |
| ICEJKCOP_5 | 0.0 | 1.0 | 0.0 |
| ICEJKCOP_6 | 0.0 | 1.0 | 0.0 |
| ICEJKCOP_7 | 0.0 | 1.0 | 0.0 |
| ICEJKCOP_8 | 0.0 | 1.0 | 0.0 |
| ICEJKCOP_9 | 0.0 | 1.0 | 0.0 |
| ICEJKCOP_10 | 0.0 | 1.0 | 0.0 |
| ICEJKCOP_11 | 0.0 | 1.0 | 0.0 |
| ICEJKCOP_12 | 0.0 | 1.0 | 0.0 |
| ICEJKCOP_13 | 0.0 | 1.0 | 0.0 |
| ICEJKCOP_14 | 0.0 | 1.0 | 0.0 |
| ICEJKCOP_15 | 0.0 | 1.0 | 0.0 |
| ICEJKCOP_16 | 0.0 | 1.0 | 0.0 |
| ICEJKCOP_17 | 0.0 | 1.0 | 0.0 |
| ICEJKCOP_18 | 0.0 | 1.0 | 0.0 |
| ICEJKCOP_19 | 0.0 | 1.0 | 0.0 |
| ICEJKCOP_20 | 1.0 | 0.0 | 1.0 |
| ICEJKCOP_21 | 0.0 | 1.0 | 0.0 |
| ICEJKCOP_22 | 0.0 | 1.0 | 0.0 |
| ICEJKCOP_23 | 1.0 | 0.0 | 1.0 |
| ICEJKCOP_24 | 0.0 | 1.0 | 0.0 |
| ICEJKCOP_25 | 0.0 | 1.0 | 0.0 |
| ICEJKCOP_26 | 0.0 | 1.0 | 0.0 |
| ICEJKCOP_27 | 0.0 | 1.0 | 0.0 |
| ICEJKCOP_28 | 0.0 | 1.0 | 0.0 |
| ICEJKCOP_29 | 0.0 | 1.0 | 0.0 |
| ICEJKCOP_30 | 0.0 | 1.0 | 0.0 |
| ICEJKCOP_31 | 0.0 | 1.0 | 0.0 |
| ICEJKCOP_32 | 0.0 | 1.0 | 0.0 |
| ICEJKCOP_33 | 0.0 | 1.0 | 0.0 |
| ICEJKCOP_34 | 0.0 | 1.0 | 0.0 |
| ICEJKCOP_35 | 0.0 | 1.0 | 0.0 |
| ICEJKCOP_36 | 1.0 | 0.0 | 1.0 |
| ICEJKCOP_37 | 1.0 | 0.0 | 1.0 |
| ICEJKCOP_38 | 0.0 | 1.0 | 0.0 |
| ICEJKCOP_39 | 0.0 | 1.0 | 0.0 |
| ICEJKCOP_40 | 0.0 | 1.0 | 0.0 |
| ICEJKCOP_41 | 1.0 | 0.0 | 1.0 |
| ICEJKCOP_42 | 1.0 | 0.0 | 1.0 |
| ICEJKCOP_43 | 1.0 | 0.0 | 1.0 |
| ICEJKCOP_44 | 0.0 | 1.0 | 0.0 |
| ICEJKCOP_45 | 1.0 | 0.0 | 1.0 |
| ICEJKCOP_46 | 0.0 | 1.0 | 0.0 |
| ICEJKCOP_47 | 1.0 | 0.0 | 1.0 |
| ICEJKCOP_48 | 1.0 | 0.0 | 1.0 |
| ICEJKCOP_50 | 1.0 | 0.0 | 1.0 |
| ICEJKCOP_51 | 0.0 | 1.0 | 0.0 |
| ICEJKCOP_52 | 1.0 | 0.0 | 1.0 |
| ICEJKCOP_53 | 1.0 | 0.0 | 1.0 |
| ICEJKCOP_54 | 0.0 | 1.0 | 0.0 |
| ICEJKCOP_55 | 1.0 | 0.0 | 1.0 |
| ICEJKCOP_57 | 1.0 | 0.0 | 1.0 |
| ICEJKCOP_58 | 1.0 | 0.0 | 1.0 |
| ICEJKCOP_59 | 1.0 | 0.0 | 1.0 |
| ICEJKCOP_60 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| ICEJKCOP_7 | 3506 | 39113 | False | Siphoviridae | VOG1309, VOG0186, VOG4855, VOG0226, VOG8987, VOG11003, VOG9860, VOG6623, VOG4693, VOG2820, VOG3643, VOG3643, VOG3643, VOG3307, VOG0198, VOG4570, VOG4549, VOG0796, VOG4544, VOG0720, VOG4564, VOG5616, VOG1300, VOG4555, VOG3434, VOG1887, VOG1322, VOG4713, VOG0723, VOG5660, VOG0724, VOG0799, VOG0725, VOG0800, VOG4545, VOG4605, VOG4599, VOG6455, VOG7896, VOG0861, VOG7017, VOG0703, VOG4918, VOG4605 |
| ICEJKCOP_31 | 1368 | 24082 | False | Siphoviridae | VOG1563, VOG0198, VOG9153, VOG4841, VOG0519, VOG4544, VOG4556, VOG4573, VOG4553, VOG0204, VOG4589, VOG1898, VOG4545, VOG4633, VOG4763, VOG3498, VOG0648, VOG1637, VOG0054 |
Phigaro v2.4.0 (Database: Jan. 2024 release)