Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| ONDNHGNF_1 | 1905884 | 1905180 | WalR | 1.74e-113 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| ONDNHGNF_9 | 7504 | 8439 | rep28 | 936 / 936 | 100.00 | CP005948 |
| ONDNHGNF_2 | 17538 | 18572 | rep38 | 1037 / 1104 | 87.75 | CP002655 |
| ONDNHGNF_12 | 10613 | 11575 | repUS73 | 978 / 1101 | 80.27 | CP002654 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| ONDNHGNF_1 | 0.0 | 1.0 | 0.0 |
| ONDNHGNF_2 | 1.0 | 0.0 | 1.0 |
| ONDNHGNF_3 | 1.0 | 0.0 | 1.0 |
| ONDNHGNF_4 | 1.0 | 0.0 | 1.0 |
| ONDNHGNF_5 | 1.0 | 0.0 | 1.0 |
| ONDNHGNF_6 | 1.0 | 0.0 | 1.0 |
| ONDNHGNF_7 | 1.0 | 0.0 | 1.0 |
| ONDNHGNF_8 | 1.0 | 0.0 | 1.0 |
| ONDNHGNF_9 | 1.0 | 0.0 | 1.0 |
| ONDNHGNF_10 | 1.0 | 0.0 | 1.0 |
| ONDNHGNF_11 | 1.0 | 0.0 | 1.0 |
| ONDNHGNF_12 | 1.0 | 0.0 | 1.0 |
| ONDNHGNF_13 | 1.0 | 0.0 | 1.0 |
| ONDNHGNF_14 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| ONDNHGNF_1 | 2936118 | 2950461 | False | Siphoviridae | VOG1563, VOG2687, VOG4632, VOG4609, VOG0205, VOG4841, VOG4581, VOG4544, VOG2935, VOG4556, VOG4568, VOG0204, VOG0198 |
| ONDNHGNF_1 | 2963578 | 2992613 | False | Siphoviridae | VOG0198, VOG5038, VOG0796, VOG4544, VOG0720, VOG7038, VOG4564, VOG10914, VOG3434, VOG1887, VOG4713, VOG1330, VOG0704, VOG4634, VOG1333, VOG1334, VOG4545, VOG1335, VOG10608, VOG3498, VOG8294, VOG1637 |
Phigaro v2.4.0 (Database: Jan. 2024 release)