Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| MEPIAJDL_1 | 2485680 | 2484976 | WalR | 1.80e-113 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| MEPIAJDL_7 | 531 | 1466 | rep28 | 936 / 936 | 100.00 | CP005948 |
| MEPIAJDL_6 | 28351 | 29253 | rep38 | 903 / 903 | 100.00 | CP005943 |
| MEPIAJDL_9 | 31100 | 32198 | repUS73 | 1101 / 1101 | 93.64 | CP002654 |
| MEPIAJDL_10 | 2440 | 3364 | repUS64 | 930 / 954 | 85.48 | JN601038 |
| MEPIAJDL_12 | 2192 | 2868 | repUS75 | 679 / 1059 | 84.54 | CP002393 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| MEPIAJDL_1 | 0.0 | 1.0 | 0.0 |
| MEPIAJDL_2 | 1.0 | 0.0 | 1.0 |
| MEPIAJDL_3 | 1.0 | 0.0 | 1.0 |
| MEPIAJDL_4 | 1.0 | 0.0 | 1.0 |
| MEPIAJDL_5 | 1.0 | 0.0 | 1.0 |
| MEPIAJDL_6 | 1.0 | 0.0 | 1.0 |
| MEPIAJDL_7 | 1.0 | 0.0 | 1.0 |
| MEPIAJDL_8 | 1.0 | 0.0 | 1.0 |
| MEPIAJDL_9 | 1.0 | 0.0 | 1.0 |
| MEPIAJDL_10 | 1.0 | 0.0 | 1.0 |
| MEPIAJDL_11 | 1.0 | 0.0 | 1.0 |
| MEPIAJDL_12 | 1.0 | 0.0 | 1.0 |
| MEPIAJDL_13 | 1.0 | 0.0 | 1.0 |
| MEPIAJDL_14 | 1.0 | 0.0 | 1.0 |
| MEPIAJDL_15 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| MEPIAJDL_1 | 301487 | 328059 | False | Siphoviridae | VOG11003, VOG0198, VOG3015, VOG0638, VOG0796, VOG4544, VOG5821, VOG0691, VOG0692, VOG4555, VOG1329, VOG0695, VOG0696, VOG0697, VOG0698, VOG9763, VOG0701, VOG4910, VOG0801, VOG4619, VOG9531, VOG8294, VOG1637, VOG0054 |
| MEPIAJDL_1 | 634705 | 665028 | False | Siphoviridae | VOG3643, VOG4010, VOG0198, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG5088, VOG0209, VOG0660, VOG0577, VOG5904, VOG4605, VOG4599, VOG10957, VOG0254, VOG4763, VOG3498, VOG9997, VOG8917, VOG9888, VOG0602 |
| MEPIAJDL_1 | 1265466 | 1301201 | False | Siphoviridae | VOG1191, VOG8294, VOG0602, VOG9888, VOG8917, VOG9997, VOG3498, VOG4763, VOG4619, VOG0801, VOG6163, VOG0541, VOG4586, VOG0704, VOG0539, VOG4589, VOG0562, VOG4553, VOG4573, VOG4556, VOG4844, VOG6154, VOG4673, VOG3643, VOG0044, VOG0586, VOG0327, VOG4609, VOG4632, VOG6545, VOG0322, VOG4548, VOG0321, VOG8925, VOG0181, VOG8222 |
Phigaro v2.4.0 (Database: Jan. 2024 release)