Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JKMMMIDH_23 | 7430 | 7233 | CspR | 3.13e-29 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| JKMMMIDH_23 | 7430 | 7233 | CspA | 5.84e-29 | cold shock protein | 80.30 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| JKMMMIDH_41 | 8491 | 9033 | rep38 | 543 / 903 | 86.00 | CP005943 |
| JKMMMIDH_16 | 37944 | 38879 | rep28 | 944 / 936 | 81.57 | CP005948 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JKMMMIDH_1 | 0.0 | 1.0 | 0.0 |
| JKMMMIDH_2 | 0.0 | 1.0 | 0.0 |
| JKMMMIDH_3 | 0.0 | 1.0 | 0.0 |
| JKMMMIDH_4 | 0.0 | 1.0 | 0.0 |
| JKMMMIDH_5 | 0.0 | 1.0 | 0.0 |
| JKMMMIDH_6 | 0.0 | 1.0 | 0.0 |
| JKMMMIDH_7 | 0.0 | 1.0 | 0.0 |
| JKMMMIDH_8 | 0.0 | 1.0 | 0.0 |
| JKMMMIDH_9 | 0.0 | 1.0 | 0.0 |
| JKMMMIDH_10 | 0.0 | 1.0 | 0.0 |
| JKMMMIDH_11 | 0.0 | 1.0 | 0.0 |
| JKMMMIDH_12 | 0.0 | 1.0 | 0.0 |
| JKMMMIDH_13 | 0.0 | 1.0 | 0.0 |
| JKMMMIDH_14 | 0.0 | 1.0 | 0.0 |
| JKMMMIDH_15 | 0.0 | 1.0 | 0.0 |
| JKMMMIDH_16 | 0.0 | 1.0 | 0.0 |
| JKMMMIDH_17 | 0.0 | 1.0 | 0.0 |
| JKMMMIDH_18 | 0.0 | 1.0 | 0.0 |
| JKMMMIDH_19 | 0.0 | 1.0 | 0.0 |
| JKMMMIDH_20 | 0.0 | 1.0 | 0.0 |
| JKMMMIDH_21 | 0.0 | 1.0 | 0.0 |
| JKMMMIDH_22 | 0.0 | 1.0 | 0.0 |
| JKMMMIDH_23 | 0.0 | 1.0 | 0.0 |
| JKMMMIDH_24 | 0.0 | 1.0 | 0.0 |
| JKMMMIDH_25 | 1.0 | 0.0 | 1.0 |
| JKMMMIDH_26 | 0.0 | 1.0 | 0.0 |
| JKMMMIDH_27 | 0.0 | 1.0 | 0.0 |
| JKMMMIDH_28 | 0.0 | 1.0 | 0.0 |
| JKMMMIDH_29 | 0.0 | 1.0 | 0.0 |
| JKMMMIDH_30 | 0.0 | 1.0 | 0.0 |
| JKMMMIDH_31 | 0.0 | 1.0 | 0.0 |
| JKMMMIDH_32 | 0.0 | 1.0 | 0.0 |
| JKMMMIDH_33 | 0.0 | 1.0 | 0.0 |
| JKMMMIDH_34 | 0.0 | 1.0 | 0.0 |
| JKMMMIDH_35 | 0.0 | 1.0 | 0.0 |
| JKMMMIDH_36 | 0.0 | 1.0 | 0.0 |
| JKMMMIDH_37 | 0.0 | 1.0 | 0.0 |
| JKMMMIDH_38 | 0.0 | 1.0 | 0.0 |
| JKMMMIDH_39 | 0.0 | 1.0 | 0.0 |
| JKMMMIDH_40 | 0.0 | 1.0 | 0.0 |
| JKMMMIDH_41 | 1.0 | 0.0 | 1.0 |
| JKMMMIDH_42 | 0.0 | 1.0 | 0.0 |
| JKMMMIDH_43 | 0.0 | 1.0 | 0.0 |
| JKMMMIDH_44 | 0.0 | 1.0 | 0.0 |
| JKMMMIDH_45 | 0.0 | 1.0 | 0.0 |
| JKMMMIDH_46 | 0.0 | 1.0 | 0.0 |
| JKMMMIDH_47 | 0.0 | 1.0 | 0.0 |
| JKMMMIDH_48 | 0.0 | 1.0 | 0.0 |
| JKMMMIDH_49 | 0.0 | 1.0 | 0.0 |
| JKMMMIDH_50 | 0.0 | 1.0 | 0.0 |
| JKMMMIDH_51 | 0.0 | 1.0 | 0.0 |
| JKMMMIDH_52 | 0.0 | 1.0 | 0.0 |
| JKMMMIDH_53 | 0.0 | 1.0 | 0.0 |
| JKMMMIDH_54 | 0.0 | 1.0 | 0.0 |
| JKMMMIDH_55 | 0.0 | 1.0 | 0.0 |
| JKMMMIDH_56 | 1.0 | 0.0 | 1.0 |
| JKMMMIDH_57 | 1.0 | 0.0 | 1.0 |
| JKMMMIDH_58 | 0.0 | 1.0 | 0.0 |
| JKMMMIDH_59 | 0.0 | 1.0 | 0.0 |
| JKMMMIDH_60 | 1.0 | 0.0 | 1.0 |
| JKMMMIDH_61 | 0.0 | 1.0 | 0.0 |
| JKMMMIDH_62 | 1.0 | 0.0 | 1.0 |
| JKMMMIDH_63 | 0.0 | 1.0 | 0.0 |
| JKMMMIDH_64 | 0.0 | 1.0 | 0.0 |
| JKMMMIDH_65 | 0.0 | 1.0 | 0.0 |
| JKMMMIDH_66 | 0.0 | 1.0 | 0.0 |
| JKMMMIDH_67 | 0.0 | 1.0 | 0.0 |
| JKMMMIDH_68 | 0.0 | 1.0 | 0.0 |
| JKMMMIDH_69 | 0.0 | 1.0 | 0.0 |
| JKMMMIDH_70 | 0.0 | 1.0 | 0.0 |
| JKMMMIDH_71 | 1.0 | 0.0 | 1.0 |
| JKMMMIDH_72 | 0.0 | 1.0 | 0.0 |
| JKMMMIDH_73 | 1.0 | 0.0 | 1.0 |
| JKMMMIDH_74 | 1.0 | 0.0 | 1.0 |
| JKMMMIDH_75 | 1.0 | 0.0 | 1.0 |
| JKMMMIDH_76 | 0.0 | 1.0 | 0.0 |
| JKMMMIDH_77 | 1.0 | 0.0 | 1.0 |
| JKMMMIDH_78 | 1.0 | 0.0 | 1.0 |
| JKMMMIDH_79 | 1.0 | 0.0 | 1.0 |
| JKMMMIDH_80 | 1.0 | 0.0 | 1.0 |
| JKMMMIDH_81 | 1.0 | 0.0 | 1.0 |
| JKMMMIDH_82 | 1.0 | 0.0 | 1.0 |
| JKMMMIDH_83 | 0.0 | 1.0 | 0.0 |
| JKMMMIDH_84 | 0.0 | 1.0 | 0.0 |
| JKMMMIDH_85 | 0.0 | 1.0 | 0.0 |
| JKMMMIDH_86 | 1.0 | 0.0 | 1.0 |
| JKMMMIDH_87 | 0.0 | 1.0 | 0.0 |
| JKMMMIDH_88 | 1.0 | 0.0 | 1.0 |
| JKMMMIDH_89 | 1.0 | 0.0 | 1.0 |
| JKMMMIDH_90 | 0.0 | 1.0 | 0.0 |
| JKMMMIDH_92 | 1.0 | 0.0 | 1.0 |
| JKMMMIDH_93 | 1.0 | 0.0 | 1.0 |
| JKMMMIDH_94 | 1.0 | 0.0 | 1.0 |
| JKMMMIDH_95 | 1.0 | 0.0 | 1.0 |
| JKMMMIDH_96 | 1.0 | 0.0 | 1.0 |
| JKMMMIDH_97 | 0.0 | 1.0 | 0.0 |
| JKMMMIDH_98 | 0.0 | 1.0 | 0.0 |
| JKMMMIDH_99 | 0.0 | 1.0 | 0.0 |
| JKMMMIDH_100 | 1.0 | 0.0 | 1.0 |
| JKMMMIDH_101 | 1.0 | 0.0 | 1.0 |
| JKMMMIDH_102 | 1.0 | 0.0 | 1.0 |
| JKMMMIDH_103 | 1.0 | 0.0 | 1.0 |
| JKMMMIDH_104 | 1.0 | 0.0 | 1.0 |
| JKMMMIDH_105 | 1.0 | 0.0 | 1.0 |
| JKMMMIDH_106 | 1.0 | 0.0 | 1.0 |
| JKMMMIDH_108 | 1.0 | 0.0 | 1.0 |
| JKMMMIDH_110 | 0.0 | 1.0 | 0.0 |
| JKMMMIDH_111 | 1.0 | 0.0 | 1.0 |
| JKMMMIDH_112 | 1.0 | 0.0 | 1.0 |
| JKMMMIDH_113 | 1.0 | 0.0 | 1.0 |
| JKMMMIDH_114 | 1.0 | 0.0 | 1.0 |
| JKMMMIDH_115 | 0.0 | 1.0 | 0.0 |
| JKMMMIDH_116 | 1.0 | 0.0 | 1.0 |
| JKMMMIDH_117 | 0.0 | 1.0 | 0.0 |
| JKMMMIDH_118 | 1.0 | 0.0 | 1.0 |
| JKMMMIDH_119 | 1.0 | 0.0 | 1.0 |
| JKMMMIDH_120 | 1.0 | 0.0 | 1.0 |
| JKMMMIDH_121 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JKMMMIDH_3 | 6651 | 17462 | False | Myoviridae / Siphoviridae | VOG1309, VOG0186, VOG0226, VOG0514, VOG8647, VOG0189, VOG8685, VOG4237, VOG4693, VOG4813, VOG0425, VOG0638, VOG1298 |
| JKMMMIDH_3 | 23577 | 51803 | False | Siphoviridae | VOG3349, VOG4841, VOG4581, VOG4544, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG6698, VOG8263, VOG0801, VOG3462, VOG10972, VOG9997, VOG4856, VOG9880 |
| JKMMMIDH_6 | 23585 | 43364 | False | Myoviridae / Siphoviridae | VOG5235, VOG0083, VOG0382, VOG0384, VOG0205, VOG0226, VOG6085, VOG0025, VOG8295, VOG1176, VOG10457 |
Phigaro v2.4.0 (Database: Jan. 2024 release)