Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IBBPIDCN_14 | 51290 | 51955 | ErmB | ARO:3000375 | ErmB | 98.64 | 89.11 | AF242872.1 |
| IBBPIDCN_30 | 4168 | 6087 | tet(O/W/32/O) | ARO:3007122 | tet(O/W/32/O) | 98.59 | 100.00 | DQ525023.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| IBBPIDCN_30 | 4168 | 6087 | tet(O/W/32/O) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | FM164392 |
| IBBPIDCN_14 | 51290 | 52002 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 96.61 | X72021 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IBBPIDCN_30 | 4171 | 6087 | tet(O/W/32/O) | tetracycline resistance ribosomal protection mosaic protein Tet(O/W/32/O) | EXACTX | 100.00 | 100.00 | WP_013646121.1 |
| IBBPIDCN_14 | 51293 | 52003 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | BLASTX | 99.58 | 96.73 | WP_001038795.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| IBBPIDCN_1 | 0.0 | 1.0 | 0.0 |
| IBBPIDCN_2 | 0.0 | 1.0 | 0.0 |
| IBBPIDCN_3 | 0.0 | 1.0 | 0.0 |
| IBBPIDCN_4 | 0.0 | 1.0 | 0.0 |
| IBBPIDCN_5 | 0.0 | 1.0 | 0.0 |
| IBBPIDCN_6 | 0.0 | 1.0 | 0.0 |
| IBBPIDCN_7 | 0.0 | 1.0 | 0.0 |
| IBBPIDCN_8 | 0.0 | 1.0 | 0.0 |
| IBBPIDCN_9 | 0.0 | 1.0 | 0.0 |
| IBBPIDCN_10 | 0.0 | 1.0 | 0.0 |
| IBBPIDCN_11 | 0.0 | 1.0 | 0.0 |
| IBBPIDCN_12 | 0.0 | 1.0 | 0.0 |
| IBBPIDCN_13 | 0.0 | 1.0 | 0.0 |
| IBBPIDCN_14 | 0.0 | 1.0 | 0.0 |
| IBBPIDCN_15 | 0.0 | 1.0 | 0.0 |
| IBBPIDCN_16 | 0.0 | 1.0 | 0.0 |
| IBBPIDCN_17 | 0.0 | 1.0 | 0.0 |
| IBBPIDCN_18 | 0.0 | 1.0 | 0.0 |
| IBBPIDCN_19 | 0.0 | 1.0 | 0.0 |
| IBBPIDCN_20 | 0.0 | 1.0 | 0.0 |
| IBBPIDCN_21 | 0.0 | 1.0 | 0.0 |
| IBBPIDCN_22 | 0.0 | 1.0 | 0.0 |
| IBBPIDCN_23 | 0.0 | 1.0 | 0.0 |
| IBBPIDCN_24 | 0.0 | 1.0 | 0.0 |
| IBBPIDCN_25 | 0.0 | 1.0 | 0.0 |
| IBBPIDCN_26 | 0.0 | 1.0 | 0.0 |
| IBBPIDCN_27 | 0.0 | 1.0 | 0.0 |
| IBBPIDCN_28 | 0.0 | 1.0 | 0.0 |
| IBBPIDCN_29 | 1.0 | 0.0 | 1.0 |
| IBBPIDCN_30 | 0.0 | 1.0 | 0.0 |
| IBBPIDCN_31 | 0.0 | 1.0 | 0.0 |
| IBBPIDCN_32 | 0.0 | 1.0 | 0.0 |
| IBBPIDCN_33 | 0.0 | 1.0 | 0.0 |
| IBBPIDCN_34 | 0.0 | 1.0 | 0.0 |
| IBBPIDCN_35 | 0.0 | 1.0 | 0.0 |
| IBBPIDCN_37 | 0.0 | 1.0 | 0.0 |
| IBBPIDCN_38 | 1.0 | 0.0 | 1.0 |
| IBBPIDCN_40 | 1.0 | 0.0 | 1.0 |
| IBBPIDCN_41 | 1.0 | 0.0 | 1.0 |
| IBBPIDCN_42 | 0.0 | 1.0 | 0.0 |
| IBBPIDCN_43 | 1.0 | 0.0 | 1.0 |
| IBBPIDCN_44 | 0.0 | 1.0 | 0.0 |
| IBBPIDCN_45 | 1.0 | 0.0 | 1.0 |
| IBBPIDCN_46 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| IBBPIDCN_2 | 31187 | 36188 | False | Myoviridae | VOG9667, VOG0275, VOG0198, VOG0125 |
| IBBPIDCN_2 | 79276 | 104348 | False | Siphoviridae | VOG0198, VOG0796, VOG4544, VOG0720, VOG7038, VOG4564, VOG4555, VOG3434, VOG1887, VOG4713, VOG1330, VOG1353, VOG0704, VOG4634, VOG1333, VOG1334, VOG1335, VOG10608, VOG5007, VOG0648, VOG0861, VOG7017 |
| IBBPIDCN_5 | 54386 | 86536 | False | Siphoviridae | VOG0275, VOG0195, VOG0635, VOG0635, VOG0634, VOG0198, VOG0796, VOG10227, VOG0691, VOG0692, VOG4555, VOG0695, VOG0696, VOG0697, VOG0698, VOG9763, VOG0701, VOG4760, VOG0801, VOG4619, VOG5859, VOG5008, VOG0861, VOG7020, VOG0686, VOG0703, VOG8294 |
Phigaro v2.4.0 (Database: Jan. 2024 release)