Probiotic potential risk score


ARGs VFs PGs PPRS
0022.00

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes


Comprehensive Antibiotic Resistance Database (CARD)

Query ID Begin End ARO name ARO accession CARD name Identity Coverage Accession no.
No hit found

RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)

ResFinder

Query ID Begin End Resistance gene Phenotype Identity Coverage Accession no.
No hit found

ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)

AMRFinderPlus

Query ID Begin End Gene symbol Sequence name Method Identity Coverage Accession no.
No hit found

AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)

Virulence factors


Virulence Factor Database (VFDB)

Query ID qstart qend Gene name e-value VF name VF category Identity Coverage Accession no.
No hit found

BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)

VirulenceFinder

Query ID Begin End Database Virulence factor Protein function Identity Coverage Accession no.
No hit found

VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)

Pathogenic genes


PHI-base

Query ID qstart qend Gene name e-value Function Identity Coverage Gene ID
KIIGHPEA_1115905116609WalR3.00e-114transcriptional regulatory protein83.83100.00EPH95667
KIIGHPEA_75761757423CspR7.52e-30cold shock protein84.6198.48AAO82613
KIIGHPEA_75761757420CspA1.15e-29cold shock protein84.85100.00CAA62903

BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)

Plasmid


PlasmidFinder

Query ID Begin End Plasmid Query / Template Identity Accession no.
KIIGHPEA_3250915732rep38643 / 90390.51CP005943
KIIGHPEA_3125043439rep28938 / 93680.28CP005948

PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)

PlasmidHunter

Query ID Prediction Chromosome Plasmid
KIIGHPEA_10.01.00.0
KIIGHPEA_20.01.00.0
KIIGHPEA_30.01.00.0
KIIGHPEA_40.01.00.0
KIIGHPEA_50.01.00.0
KIIGHPEA_60.01.00.0
KIIGHPEA_70.01.00.0
KIIGHPEA_80.01.00.0
KIIGHPEA_90.01.00.0
KIIGHPEA_100.01.00.0
KIIGHPEA_110.01.00.0
KIIGHPEA_120.01.00.0
KIIGHPEA_130.01.00.0
KIIGHPEA_140.01.00.0
KIIGHPEA_150.01.00.0
KIIGHPEA_160.01.00.0
KIIGHPEA_170.01.00.0
KIIGHPEA_180.01.00.0
KIIGHPEA_190.01.00.0
KIIGHPEA_200.01.00.0
KIIGHPEA_210.01.00.0
KIIGHPEA_221.00.01.0
KIIGHPEA_231.00.01.0
KIIGHPEA_241.00.01.0
KIIGHPEA_251.00.01.0
KIIGHPEA_260.01.00.0
KIIGHPEA_271.00.01.0
KIIGHPEA_281.00.01.0
KIIGHPEA_291.00.01.0
KIIGHPEA_301.00.01.0
KIIGHPEA_311.00.01.0
KIIGHPEA_321.00.01.0
KIIGHPEA_331.00.01.0
KIIGHPEA_341.00.01.0
KIIGHPEA_351.00.01.0
KIIGHPEA_360.01.00.0
KIIGHPEA_371.00.01.0
KIIGHPEA_381.00.01.0
KIIGHPEA_390.01.00.0
KIIGHPEA_411.00.01.0
KIIGHPEA_421.00.01.0
KIIGHPEA_441.00.01.0
KIIGHPEA_451.00.01.0
KIIGHPEA_461.00.01.0
KIIGHPEA_471.00.01.0

PlasmidHunter v 1.4.5 (Database: May. 2024 release)

Prophage


Phigaro

Query ID Begin End Transposable Taxonomy pVOGs
KIIGHPEA_3147764182041FalseSiphoviridaeVOG6495, VOG0181, VOG7298, VOG9708, VOG0283, VOG5046, VOG0189, VOG4693, VOG0198, VOG0418, VOG0686, VOG0796, VOG4544, VOG0720, VOG4564, VOG10914, VOG3434, VOG1887, VOG4713, VOG1330, VOG0704, VOG4634, VOG1333, VOG4545, VOG1335, VOG10608, VOG3498, VOG8294, VOG1637
KIIGHPEA_4217074237344FalseSiphoviridaeVOG0602, VOG9888, VOG8917, VOG9997, VOG3498, VOG4619, VOG0801, VOG6163, VOG0541, VOG4586, VOG0704, VOG0539, VOG4589, VOG0562, VOG4553, VOG4573, VOG4556, VOG4844, VOG6154
KIIGHPEA_4240295248835FalseSiphoviridaeVOG3643, VOG0044, VOG0327, VOG4609, VOG4632, VOG6545, VOG0322, VOG4548, VOG10904, VOG0321
KIIGHPEA_66257089244FalseSiphoviridaeVOG8870, VOG10957, VOG4599, VOG4605, VOG5904, VOG0660, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG4841, VOG0198, VOG6005, VOG0189, VOG4566

Phigaro v2.4.0 (Database: Jan. 2024 release)


Insertion sequence (IS) elements