Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CCIHCBMD_2 | 22741 | 23445 | WalR | 2.49e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| CCIHCBMD_4 | 149196 | 149390 | CspR | 1.85e-29 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| CCIHCBMD_4 | 149196 | 149393 | CspA | 2.84e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| CCIHCBMD_16 | 5770 | 6705 | rep28 | 936 / 936 | 100.00 | CP005948 |
| CCIHCBMD_19 | 264 | 1217 | repUS64 | 954 / 954 | 97.59 | JN601038 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CCIHCBMD_1 | 0.0 | 1.0 | 0.0 |
| CCIHCBMD_2 | 0.0 | 1.0 | 0.0 |
| CCIHCBMD_3 | 0.0 | 1.0 | 0.0 |
| CCIHCBMD_4 | 0.0 | 1.0 | 0.0 |
| CCIHCBMD_5 | 0.0 | 1.0 | 0.0 |
| CCIHCBMD_6 | 0.0 | 1.0 | 0.0 |
| CCIHCBMD_7 | 0.0 | 1.0 | 0.0 |
| CCIHCBMD_8 | 0.0 | 1.0 | 0.0 |
| CCIHCBMD_9 | 0.0 | 1.0 | 0.0 |
| CCIHCBMD_10 | 0.0 | 1.0 | 0.0 |
| CCIHCBMD_11 | 0.0 | 1.0 | 0.0 |
| CCIHCBMD_12 | 0.0 | 1.0 | 0.0 |
| CCIHCBMD_13 | 0.0 | 1.0 | 0.0 |
| CCIHCBMD_14 | 0.0 | 1.0 | 0.0 |
| CCIHCBMD_15 | 0.0 | 1.0 | 0.0 |
| CCIHCBMD_16 | 1.0 | 0.0 | 1.0 |
| CCIHCBMD_17 | 1.0 | 0.0 | 1.0 |
| CCIHCBMD_19 | 1.0 | 0.0 | 1.0 |
| CCIHCBMD_20 | 1.0 | 0.0 | 1.0 |
| CCIHCBMD_22 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CCIHCBMD_4 | 296284 | 326109 | False | Siphoviridae | VOG0685, VOG0283, VOG0226, VOG10904, VOG0514, VOG4566, VOG0189, VOG6005, VOG0198, VOG4841, VOG4581, VOG1886, VOG6939, VOG4556, VOG4568, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG6163, VOG4605, VOG4599, VOG10957, VOG8870 |
| CCIHCBMD_8 | 33813 | 61744 | False | Siphoviridae | VOG0322, VOG6545, VOG4632, VOG4609, VOG0327, VOG0044, VOG3643, VOG4673, VOG4844, VOG4556, VOG4573, VOG4553, VOG0562, VOG4589, VOG0539, VOG0704, VOG4586, VOG0541, VOG6163, VOG0801, VOG4619, VOG3498, VOG9997, VOG8917, VOG1637 |
Phigaro v2.4.0 (Database: Jan. 2024 release)