Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| ECJHKMOE_11 | 93363 | 94067 | WalR | 7.09e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| ECJHKMOE_5 | 47019 | 47213 | CspR | 8.79e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| ECJHKMOE_5 | 47019 | 47216 | CspA | 1.35e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| ECJHKMOE_1 | 0.0 | 1.0 | 0.0 |
| ECJHKMOE_2 | 0.0 | 1.0 | 0.0 |
| ECJHKMOE_3 | 0.0 | 1.0 | 0.0 |
| ECJHKMOE_4 | 0.0 | 1.0 | 0.0 |
| ECJHKMOE_5 | 0.0 | 1.0 | 0.0 |
| ECJHKMOE_6 | 0.0 | 1.0 | 0.0 |
| ECJHKMOE_7 | 0.0 | 1.0 | 0.0 |
| ECJHKMOE_8 | 0.0 | 1.0 | 0.0 |
| ECJHKMOE_9 | 0.0 | 1.0 | 0.0 |
| ECJHKMOE_10 | 0.0 | 1.0 | 0.0 |
| ECJHKMOE_11 | 0.0 | 1.0 | 0.0 |
| ECJHKMOE_12 | 0.0 | 1.0 | 0.0 |
| ECJHKMOE_13 | 0.0 | 1.0 | 0.0 |
| ECJHKMOE_14 | 0.0 | 1.0 | 0.0 |
| ECJHKMOE_15 | 0.0 | 1.0 | 0.0 |
| ECJHKMOE_16 | 0.0 | 1.0 | 0.0 |
| ECJHKMOE_17 | 0.0 | 1.0 | 0.0 |
| ECJHKMOE_18 | 0.0 | 1.0 | 0.0 |
| ECJHKMOE_19 | 1.0 | 0.0 | 1.0 |
| ECJHKMOE_20 | 1.0 | 0.0 | 1.0 |
| ECJHKMOE_21 | 0.0 | 1.0 | 0.0 |
| ECJHKMOE_22 | 0.0 | 1.0 | 0.0 |
| ECJHKMOE_23 | 0.0 | 1.0 | 0.0 |
| ECJHKMOE_24 | 0.0 | 1.0 | 0.0 |
| ECJHKMOE_25 | 0.0 | 1.0 | 0.0 |
| ECJHKMOE_26 | 0.0 | 1.0 | 0.0 |
| ECJHKMOE_27 | 1.0 | 0.0 | 1.0 |
| ECJHKMOE_28 | 0.0 | 1.0 | 0.0 |
| ECJHKMOE_29 | 1.0 | 0.0 | 1.0 |
| ECJHKMOE_30 | 0.0 | 1.0 | 0.0 |
| ECJHKMOE_31 | 1.0 | 0.0 | 1.0 |
| ECJHKMOE_32 | 0.0 | 1.0 | 0.0 |
| ECJHKMOE_33 | 0.0 | 1.0 | 0.0 |
| ECJHKMOE_34 | 1.0 | 0.0 | 1.0 |
| ECJHKMOE_35 | 1.0 | 0.0 | 1.0 |
| ECJHKMOE_36 | 0.0 | 1.0 | 0.0 |
| ECJHKMOE_37 | 1.0 | 0.0 | 1.0 |
| ECJHKMOE_38 | 0.0 | 1.0 | 0.0 |
| ECJHKMOE_39 | 1.0 | 0.0 | 1.0 |
| ECJHKMOE_40 | 0.0 | 1.0 | 0.0 |
| ECJHKMOE_42 | 0.0 | 1.0 | 0.0 |
| ECJHKMOE_43 | 0.0 | 1.0 | 0.0 |
| ECJHKMOE_44 | 0.0 | 1.0 | 0.0 |
| ECJHKMOE_45 | 0.0 | 1.0 | 0.0 |
| ECJHKMOE_46 | 0.0 | 1.0 | 0.0 |
| ECJHKMOE_47 | 0.0 | 1.0 | 0.0 |
| ECJHKMOE_48 | 1.0 | 0.0 | 1.0 |
| ECJHKMOE_49 | 0.0 | 1.0 | 0.0 |
| ECJHKMOE_50 | 1.0 | 0.0 | 1.0 |
| ECJHKMOE_51 | 0.0 | 1.0 | 0.0 |
| ECJHKMOE_52 | 0.0 | 1.0 | 0.0 |
| ECJHKMOE_54 | 0.0 | 1.0 | 0.0 |
| ECJHKMOE_55 | 1.0 | 0.0 | 1.0 |
| ECJHKMOE_56 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| ECJHKMOE_3 | 81215 | 116919 | False | Siphoviridae | VOG8222, VOG0181, VOG0321, VOG4548, VOG9667, VOG0322, VOG8066, VOG6545, VOG4632, VOG4609, VOG0327, VOG4673, VOG6972, VOG6154, VOG4844, VOG4556, VOG4573, VOG4553, VOG0562, VOG4589, VOG0539, VOG0704, VOG4586, VOG0541, VOG6163, VOG0801, VOG4619, VOG3498, VOG9997, VOG8917, VOG9888, VOG0602, VOG8294, VOG1191 |
| ECJHKMOE_15 | 3213 | 6072 | False | Siphoviridae | VOG2703, VOG11003, VOG11003, VOG6495, VOG9667 |
| ECJHKMOE_18 | 48737 | 53237 | False | Siphoviridae | VOG0535, VOG0283, VOG4799, VOG0025, VOG7735 |
Phigaro v2.4.0 (Database: Jan. 2024 release)