Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| EIPAKIKK_77 | 65867 | 65163 | WalR | 1.63e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| EIPAKIKK_24 | 152485 | 152288 | CspR | 1.08e-32 | cold shock protein | 87.88 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| EIPAKIKK_3 | 0.0 | 1.0 | 0.0 |
| EIPAKIKK_4 | 0.0 | 1.0 | 0.0 |
| EIPAKIKK_5 | 0.0 | 1.0 | 0.0 |
| EIPAKIKK_6 | 0.0 | 1.0 | 0.0 |
| EIPAKIKK_7 | 0.0 | 1.0 | 0.0 |
| EIPAKIKK_8 | 0.0 | 1.0 | 0.0 |
| EIPAKIKK_9 | 0.0 | 1.0 | 0.0 |
| EIPAKIKK_10 | 0.0 | 1.0 | 0.0 |
| EIPAKIKK_11 | 0.0 | 1.0 | 0.0 |
| EIPAKIKK_12 | 0.0 | 1.0 | 0.0 |
| EIPAKIKK_13 | 0.0 | 1.0 | 0.0 |
| EIPAKIKK_14 | 0.0 | 1.0 | 0.0 |
| EIPAKIKK_15 | 0.0 | 1.0 | 0.0 |
| EIPAKIKK_16 | 0.0 | 1.0 | 0.0 |
| EIPAKIKK_17 | 0.0 | 1.0 | 0.0 |
| EIPAKIKK_18 | 0.0 | 1.0 | 0.0 |
| EIPAKIKK_19 | 0.0 | 1.0 | 0.0 |
| EIPAKIKK_20 | 0.0 | 1.0 | 0.0 |
| EIPAKIKK_21 | 0.0 | 1.0 | 0.0 |
| EIPAKIKK_22 | 0.0 | 1.0 | 0.0 |
| EIPAKIKK_23 | 0.0 | 1.0 | 0.0 |
| EIPAKIKK_24 | 0.0 | 1.0 | 0.0 |
| EIPAKIKK_25 | 0.0 | 1.0 | 0.0 |
| EIPAKIKK_26 | 0.0 | 1.0 | 0.0 |
| EIPAKIKK_27 | 0.0 | 1.0 | 0.0 |
| EIPAKIKK_28 | 0.0 | 1.0 | 0.0 |
| EIPAKIKK_29 | 0.0 | 1.0 | 0.0 |
| EIPAKIKK_30 | 0.0 | 1.0 | 0.0 |
| EIPAKIKK_31 | 0.0 | 1.0 | 0.0 |
| EIPAKIKK_32 | 0.0 | 1.0 | 0.0 |
| EIPAKIKK_33 | 0.0 | 1.0 | 0.0 |
| EIPAKIKK_34 | 0.0 | 1.0 | 0.0 |
| EIPAKIKK_35 | 0.0 | 1.0 | 0.0 |
| EIPAKIKK_36 | 0.0 | 1.0 | 0.0 |
| EIPAKIKK_37 | 0.0 | 1.0 | 0.0 |
| EIPAKIKK_38 | 0.0 | 1.0 | 0.0 |
| EIPAKIKK_39 | 1.0 | 0.0 | 1.0 |
| EIPAKIKK_40 | 1.0 | 0.0 | 1.0 |
| EIPAKIKK_41 | 0.0 | 1.0 | 0.0 |
| EIPAKIKK_42 | 1.0 | 0.0 | 1.0 |
| EIPAKIKK_43 | 1.0 | 0.0 | 1.0 |
| EIPAKIKK_44 | 0.0 | 1.0 | 0.0 |
| EIPAKIKK_45 | 1.0 | 0.0 | 1.0 |
| EIPAKIKK_46 | 0.0 | 1.0 | 0.0 |
| EIPAKIKK_48 | 0.0 | 1.0 | 0.0 |
| EIPAKIKK_49 | 1.0 | 0.0 | 1.0 |
| EIPAKIKK_50 | 1.0 | 0.0 | 1.0 |
| EIPAKIKK_51 | 1.0 | 0.0 | 1.0 |
| EIPAKIKK_52 | 0.0 | 1.0 | 0.0 |
| EIPAKIKK_53 | 1.0 | 0.0 | 1.0 |
| EIPAKIKK_54 | 1.0 | 0.0 | 1.0 |
| EIPAKIKK_55 | 1.0 | 0.0 | 1.0 |
| EIPAKIKK_56 | 1.0 | 0.0 | 1.0 |
| EIPAKIKK_57 | 0.0 | 1.0 | 0.0 |
| EIPAKIKK_68 | 0.0 | 1.0 | 0.0 |
| EIPAKIKK_77 | 0.0 | 1.0 | 0.0 |
| EIPAKIKK_87 | 0.0 | 1.0 | 0.0 |
| EIPAKIKK_98 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| EIPAKIKK_3 | 66391 | 79025 | False | Siphoviridae | VOG4589, VOG0204, VOG4568, VOG4556, VOG5051, VOG4544, VOG4581, VOG4841, VOG4609, VOG4632, VOG1581 |
| EIPAKIKK_13 | 2809 | 25213 | False | Siphoviridae | VOG1886, VOG0202, VOG4556, VOG4568, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG6163, VOG4605, VOG4599, VOG6455, VOG7896, VOG0753, VOG0703, VOG8294, VOG6495 |
| EIPAKIKK_24 | 96323 | 129912 | False | Siphoviridae | VOG1082, VOG4918, VOG0054, VOG1637, VOG7896, VOG6455, VOG4599, VOG4605, VOG4545, VOG0800, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG1329, VOG4555, VOG4564, VOG0720, VOG4544, VOG0796, VOG4549, VOG10904, VOG4570, VOG0198, VOG3643, VOG3643, VOG6131, VOG2820, VOG9759, VOG9741, VOG4693, VOG6623, VOG9860, VOG9667, VOG11003, VOG0226, VOG4566, VOG0186, VOG1309 |
Phigaro v2.4.0 (Database: Jan. 2024 release)