Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| NIPBFDKC_266 | 4701 | 4507 | CspA | 1.26e-28 | cold shock protein | 84.61 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NIPBFDKC_10 | 0.0 | 1.0 | 0.0 |
| NIPBFDKC_20 | 0.0 | 1.0 | 0.0 |
| NIPBFDKC_31 | 0.0 | 1.0 | 0.0 |
| NIPBFDKC_41 | 0.0 | 1.0 | 0.0 |
| NIPBFDKC_50 | 0.0 | 1.0 | 0.0 |
| NIPBFDKC_59 | 0.0 | 1.0 | 0.0 |
| NIPBFDKC_70 | 0.0 | 1.0 | 0.0 |
| NIPBFDKC_79 | 0.0 | 1.0 | 0.0 |
| NIPBFDKC_87 | 0.0 | 1.0 | 0.0 |
| NIPBFDKC_97 | 0.0 | 1.0 | 0.0 |
| NIPBFDKC_98 | 0.0 | 1.0 | 0.0 |
| NIPBFDKC_108 | 0.0 | 1.0 | 0.0 |
| NIPBFDKC_118 | 0.0 | 1.0 | 0.0 |
| NIPBFDKC_128 | 0.0 | 1.0 | 0.0 |
| NIPBFDKC_138 | 0.0 | 1.0 | 0.0 |
| NIPBFDKC_148 | 0.0 | 1.0 | 0.0 |
| NIPBFDKC_158 | 0.0 | 1.0 | 0.0 |
| NIPBFDKC_168 | 0.0 | 1.0 | 0.0 |
| NIPBFDKC_179 | 0.0 | 1.0 | 0.0 |
| NIPBFDKC_190 | 0.0 | 1.0 | 0.0 |
| NIPBFDKC_199 | 1.0 | 0.0 | 1.0 |
| NIPBFDKC_200 | 0.0 | 1.0 | 0.0 |
| NIPBFDKC_208 | 0.0 | 1.0 | 0.0 |
| NIPBFDKC_217 | 0.0 | 1.0 | 0.0 |
| NIPBFDKC_228 | 0.0 | 1.0 | 0.0 |
| NIPBFDKC_238 | 0.0 | 1.0 | 0.0 |
| NIPBFDKC_248 | 0.0 | 1.0 | 0.0 |
| NIPBFDKC_250 | 0.0 | 1.0 | 0.0 |
| NIPBFDKC_251 | 0.0 | 1.0 | 0.0 |
| NIPBFDKC_252 | 0.0 | 1.0 | 0.0 |
| NIPBFDKC_253 | 0.0 | 1.0 | 0.0 |
| NIPBFDKC_254 | 0.0 | 1.0 | 0.0 |
| NIPBFDKC_255 | 0.0 | 1.0 | 0.0 |
| NIPBFDKC_256 | 0.0 | 1.0 | 0.0 |
| NIPBFDKC_257 | 0.0 | 1.0 | 0.0 |
| NIPBFDKC_258 | 0.0 | 1.0 | 0.0 |
| NIPBFDKC_259 | 0.0 | 1.0 | 0.0 |
| NIPBFDKC_260 | 0.0 | 1.0 | 0.0 |
| NIPBFDKC_261 | 0.0 | 1.0 | 0.0 |
| NIPBFDKC_262 | 0.0 | 1.0 | 0.0 |
| NIPBFDKC_263 | 0.0 | 1.0 | 0.0 |
| NIPBFDKC_264 | 0.0 | 1.0 | 0.0 |
| NIPBFDKC_265 | 1.0 | 0.0 | 1.0 |
| NIPBFDKC_266 | 0.0 | 1.0 | 0.0 |
| NIPBFDKC_267 | 0.0 | 1.0 | 0.0 |
| NIPBFDKC_268 | 1.0 | 0.0 | 1.0 |
| NIPBFDKC_269 | 0.0 | 1.0 | 0.0 |
| NIPBFDKC_270 | 0.0 | 1.0 | 0.0 |
| NIPBFDKC_271 | 1.0 | 0.0 | 1.0 |
| NIPBFDKC_272 | 1.0 | 0.0 | 1.0 |
| NIPBFDKC_273 | 0.0 | 1.0 | 0.0 |
| NIPBFDKC_274 | 1.0 | 0.0 | 1.0 |
| NIPBFDKC_275 | 1.0 | 0.0 | 1.0 |
| NIPBFDKC_276 | 1.0 | 0.0 | 1.0 |
| NIPBFDKC_277 | 0.0 | 1.0 | 0.0 |
| NIPBFDKC_278 | 0.0 | 1.0 | 0.0 |
| NIPBFDKC_279 | 0.0 | 1.0 | 0.0 |
| NIPBFDKC_281 | 1.0 | 0.0 | 1.0 |
| NIPBFDKC_282 | 1.0 | 0.0 | 1.0 |
| NIPBFDKC_284 | 1.0 | 0.0 | 1.0 |
| NIPBFDKC_285 | 1.0 | 0.0 | 1.0 |
| NIPBFDKC_288 | 0.0 | 1.0 | 0.0 |
| NIPBFDKC_299 | 0.0 | 1.0 | 0.0 |
| NIPBFDKC_309 | 0.0 | 1.0 | 0.0 |
| NIPBFDKC_319 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NIPBFDKC_190 | 1230 | 21488 | False | Siphoviridae | VOG1050, VOG10972, VOG3462, VOG0801, VOG6163, VOG0725, VOG0799, VOG0724, VOG1353, VOG4713, VOG1329, VOG4555, VOG0638, VOG4564, VOG0720, VOG10227 |
| NIPBFDKC_199 | 4520 | 20181 | False | Siphoviridae | VOG3462, VOG0801, VOG6163, VOG0209, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG1886, VOG0866, VOG9312 |
| NIPBFDKC_200 | 87844 | 96549 | False | Siphoviridae | VOG4841, VOG4581, VOG4544, VOG4556, VOG4568, VOG0198, VOG0204 |
Phigaro v2.4.0 (Database: Jan. 2024 release)