Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| GFPFHPBP_82 | 178202 | 177498 | WalR | 1.69e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| GFPFHPBP_227 | 137843 | 138037 | CspR | 6.16e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| GFPFHPBP_227 | 137843 | 138040 | CspA | 9.45e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GFPFHPBP_7 | 0.0 | 1.0 | 0.0 |
| GFPFHPBP_14 | 0.0 | 1.0 | 0.0 |
| GFPFHPBP_23 | 0.0 | 1.0 | 0.0 |
| GFPFHPBP_33 | 0.0 | 1.0 | 0.0 |
| GFPFHPBP_39 | 0.0 | 1.0 | 0.0 |
| GFPFHPBP_48 | 0.0 | 1.0 | 0.0 |
| GFPFHPBP_58 | 0.0 | 1.0 | 0.0 |
| GFPFHPBP_67 | 0.0 | 1.0 | 0.0 |
| GFPFHPBP_74 | 0.0 | 1.0 | 0.0 |
| GFPFHPBP_81 | 0.0 | 1.0 | 0.0 |
| GFPFHPBP_82 | 0.0 | 1.0 | 0.0 |
| GFPFHPBP_92 | 0.0 | 1.0 | 0.0 |
| GFPFHPBP_101 | 0.0 | 1.0 | 0.0 |
| GFPFHPBP_108 | 0.0 | 1.0 | 0.0 |
| GFPFHPBP_118 | 1.0 | 0.0 | 1.0 |
| GFPFHPBP_126 | 0.0 | 1.0 | 0.0 |
| GFPFHPBP_135 | 0.0 | 1.0 | 0.0 |
| GFPFHPBP_141 | 0.0 | 1.0 | 0.0 |
| GFPFHPBP_148 | 0.0 | 1.0 | 0.0 |
| GFPFHPBP_157 | 0.0 | 1.0 | 0.0 |
| GFPFHPBP_163 | 0.0 | 1.0 | 0.0 |
| GFPFHPBP_164 | 0.0 | 1.0 | 0.0 |
| GFPFHPBP_165 | 0.0 | 1.0 | 0.0 |
| GFPFHPBP_166 | 0.0 | 1.0 | 0.0 |
| GFPFHPBP_167 | 1.0 | 0.0 | 1.0 |
| GFPFHPBP_168 | 0.0 | 1.0 | 0.0 |
| GFPFHPBP_169 | 1.0 | 0.0 | 1.0 |
| GFPFHPBP_172 | 0.0 | 1.0 | 0.0 |
| GFPFHPBP_175 | 0.0 | 1.0 | 0.0 |
| GFPFHPBP_182 | 0.0 | 1.0 | 0.0 |
| GFPFHPBP_192 | 0.0 | 1.0 | 0.0 |
| GFPFHPBP_201 | 0.0 | 1.0 | 0.0 |
| GFPFHPBP_209 | 0.0 | 1.0 | 0.0 |
| GFPFHPBP_217 | 0.0 | 1.0 | 0.0 |
| GFPFHPBP_227 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GFPFHPBP_33 | 53330 | 59434 | False | Siphoviridae | VOG4609, VOG4632, VOG7169, VOG4565, VOG4552, VOG3699, VOG9667 |
| GFPFHPBP_82 | 179122 | 190295 | False | Siphoviridae | VOG8908, VOG0198, VOG0204, VOG4568, VOG4556, VOG2935, VOG4544, VOG4581, VOG4841, VOG0205, VOG4609, VOG4632 |
| GFPFHPBP_126 | 8286 | 45713 | False | Siphoviridae | VOG11003, VOG6495, VOG0181, VOG7298, VOG1309, VOG0186, VOG4566, VOG4693, VOG0586, VOG5047, VOG0198, VOG4694, VOG0796, VOG4544, VOG0720, VOG7038, VOG4564, VOG10914, VOG3434, VOG1887, VOG4713, VOG1330, VOG0704, VOG4634, VOG1333, VOG4545, VOG1335, VOG10608, VOG3498, VOG9997, VOG8294 |
| GFPFHPBP_141 | 1431 | 20620 | False | Siphoviridae | VOG9888, VOG8917, VOG9997, VOG3498, VOG4619, VOG0801, VOG6163, VOG0541, VOG4586, VOG0704, VOG0539, VOG4589, VOG0562, VOG4553, VOG4573, VOG4556, VOG4844 |
| GFPFHPBP_192 | 177850 | 194409 | False | Siphoviridae | VOG0753, VOG4615, VOG9998, VOG0254, VOG8870, VOG10957, VOG4599, VOG4605, VOG6163, VOG0660, VOG0209, VOG4586 |
| GFPFHPBP_209 | 560 | 12553 | False | Siphoviridae | VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG7810, VOG0741, VOG4841, VOG0198, VOG6005, VOG0189, VOG4566, VOG4566 |
Phigaro v2.4.0 (Database: Jan. 2024 release)