Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CAGJLJIM_9 | 43345 | 42641 | WalR | 1.13e-114 | transcriptional regulatory protein | 83.83 | 100.00 | EPH95667 |
| CAGJLJIM_5 | 254747 | 254941 | CspR | 1.19e-29 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| CAGJLJIM_5 | 254747 | 254944 | CspA | 1.82e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| CAGJLJIM_15 | 2341 | 3303 | repUS73 | 978 / 1101 | 80.06 | CP002654 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CAGJLJIM_1 | 0.0 | 1.0 | 0.0 |
| CAGJLJIM_2 | 0.0 | 1.0 | 0.0 |
| CAGJLJIM_3 | 0.0 | 1.0 | 0.0 |
| CAGJLJIM_4 | 0.0 | 1.0 | 0.0 |
| CAGJLJIM_5 | 0.0 | 1.0 | 0.0 |
| CAGJLJIM_6 | 0.0 | 1.0 | 0.0 |
| CAGJLJIM_7 | 0.0 | 1.0 | 0.0 |
| CAGJLJIM_8 | 0.0 | 1.0 | 0.0 |
| CAGJLJIM_9 | 0.0 | 1.0 | 0.0 |
| CAGJLJIM_10 | 0.0 | 1.0 | 0.0 |
| CAGJLJIM_11 | 0.0 | 1.0 | 0.0 |
| CAGJLJIM_12 | 0.0 | 1.0 | 0.0 |
| CAGJLJIM_13 | 0.0 | 1.0 | 0.0 |
| CAGJLJIM_14 | 0.0 | 1.0 | 0.0 |
| CAGJLJIM_15 | 1.0 | 0.0 | 1.0 |
| CAGJLJIM_16 | 1.0 | 0.0 | 1.0 |
| CAGJLJIM_17 | 1.0 | 0.0 | 1.0 |
| CAGJLJIM_18 | 0.0 | 1.0 | 0.0 |
| CAGJLJIM_19 | 0.0 | 1.0 | 0.0 |
| CAGJLJIM_20 | 0.0 | 1.0 | 0.0 |
| CAGJLJIM_21 | 1.0 | 0.0 | 1.0 |
| CAGJLJIM_22 | 0.0 | 1.0 | 0.0 |
| CAGJLJIM_23 | 0.0 | 1.0 | 0.0 |
| CAGJLJIM_24 | 0.0 | 1.0 | 0.0 |
| CAGJLJIM_25 | 1.0 | 0.0 | 1.0 |
| CAGJLJIM_26 | 0.0 | 1.0 | 0.0 |
| CAGJLJIM_27 | 0.0 | 1.0 | 0.0 |
| CAGJLJIM_28 | 1.0 | 0.0 | 1.0 |
| CAGJLJIM_29 | 1.0 | 0.0 | 1.0 |
| CAGJLJIM_30 | 1.0 | 0.0 | 1.0 |
| CAGJLJIM_31 | 1.0 | 0.0 | 1.0 |
| CAGJLJIM_32 | 1.0 | 0.0 | 1.0 |
| CAGJLJIM_34 | 1.0 | 0.0 | 1.0 |
| CAGJLJIM_35 | 1.0 | 0.0 | 1.0 |
| CAGJLJIM_36 | 1.0 | 0.0 | 1.0 |
| CAGJLJIM_37 | 1.0 | 0.0 | 1.0 |
| CAGJLJIM_38 | 1.0 | 0.0 | 1.0 |
| CAGJLJIM_39 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CAGJLJIM_1 | 80756 | 117580 | False | Siphoviridae | VOG8222, VOG0181, VOG0321, VOG4548, VOG10904, VOG0322, VOG6545, VOG4632, VOG4609, VOG0327, VOG4567, VOG3691, VOG4673, VOG6154, VOG4844, VOG4556, VOG4573, VOG4553, VOG0562, VOG4589, VOG0539, VOG0704, VOG4586, VOG0541, VOG6163, VOG0801, VOG4619, VOG3498, VOG9997, VOG8917, VOG9888, VOG0602, VOG8294, VOG1521, VOG1191, VOG3443 |
| CAGJLJIM_2 | 54976 | 77041 | False | Siphoviridae | VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0660, VOG4605, VOG4599 |
| CAGJLJIM_3 | 69749 | 95713 | False | Siphoviridae | VOG4705, VOG4334, VOG6373, VOG8438, VOG4619, VOG0801, VOG6163, VOG0701, VOG9763, VOG6548, VOG0697, VOG0696, VOG0695, VOG4711, VOG9317, VOG0692, VOG0691, VOG0611, VOG3691, VOG0198, VOG1049, VOG3643, VOG0044, VOG5883 |
| CAGJLJIM_9 | 47132 | 52098 | False | Unknown | VOG4556, VOG4544, VOG4581, VOG4841 |
Phigaro v2.4.0 (Database: Jan. 2024 release)