Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| IBMHEKCL_58 | 106393 | 105689 | WalR | 1.14e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| IBMHEKCL_13 | 47337 | 47140 | CspR | 8.82e-34 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| IBMHEKCL_4 | 0.0 | 1.0 | 0.0 |
| IBMHEKCL_5 | 0.0 | 1.0 | 0.0 |
| IBMHEKCL_6 | 0.0 | 1.0 | 0.0 |
| IBMHEKCL_7 | 0.0 | 1.0 | 0.0 |
| IBMHEKCL_8 | 0.0 | 1.0 | 0.0 |
| IBMHEKCL_9 | 0.0 | 1.0 | 0.0 |
| IBMHEKCL_10 | 0.0 | 1.0 | 0.0 |
| IBMHEKCL_11 | 0.0 | 1.0 | 0.0 |
| IBMHEKCL_12 | 0.0 | 1.0 | 0.0 |
| IBMHEKCL_13 | 0.0 | 1.0 | 0.0 |
| IBMHEKCL_14 | 0.0 | 1.0 | 0.0 |
| IBMHEKCL_15 | 0.0 | 1.0 | 0.0 |
| IBMHEKCL_16 | 0.0 | 1.0 | 0.0 |
| IBMHEKCL_17 | 0.0 | 1.0 | 0.0 |
| IBMHEKCL_18 | 0.0 | 1.0 | 0.0 |
| IBMHEKCL_19 | 0.0 | 1.0 | 0.0 |
| IBMHEKCL_20 | 0.0 | 1.0 | 0.0 |
| IBMHEKCL_21 | 1.0 | 0.0 | 1.0 |
| IBMHEKCL_22 | 0.0 | 1.0 | 0.0 |
| IBMHEKCL_23 | 0.0 | 1.0 | 0.0 |
| IBMHEKCL_24 | 0.0 | 1.0 | 0.0 |
| IBMHEKCL_25 | 0.0 | 1.0 | 0.0 |
| IBMHEKCL_26 | 0.0 | 1.0 | 0.0 |
| IBMHEKCL_27 | 1.0 | 0.0 | 1.0 |
| IBMHEKCL_28 | 0.0 | 1.0 | 0.0 |
| IBMHEKCL_29 | 0.0 | 1.0 | 0.0 |
| IBMHEKCL_30 | 0.0 | 1.0 | 0.0 |
| IBMHEKCL_31 | 0.0 | 1.0 | 0.0 |
| IBMHEKCL_32 | 0.0 | 1.0 | 0.0 |
| IBMHEKCL_33 | 0.0 | 1.0 | 0.0 |
| IBMHEKCL_34 | 0.0 | 1.0 | 0.0 |
| IBMHEKCL_35 | 1.0 | 0.0 | 1.0 |
| IBMHEKCL_36 | 0.0 | 1.0 | 0.0 |
| IBMHEKCL_37 | 1.0 | 0.0 | 1.0 |
| IBMHEKCL_38 | 1.0 | 0.0 | 1.0 |
| IBMHEKCL_39 | 0.0 | 1.0 | 0.0 |
| IBMHEKCL_40 | 1.0 | 0.0 | 1.0 |
| IBMHEKCL_41 | 0.0 | 1.0 | 0.0 |
| IBMHEKCL_43 | 0.0 | 1.0 | 0.0 |
| IBMHEKCL_44 | 1.0 | 0.0 | 1.0 |
| IBMHEKCL_45 | 1.0 | 0.0 | 1.0 |
| IBMHEKCL_46 | 0.0 | 1.0 | 0.0 |
| IBMHEKCL_47 | 0.0 | 1.0 | 0.0 |
| IBMHEKCL_48 | 1.0 | 0.0 | 1.0 |
| IBMHEKCL_49 | 1.0 | 0.0 | 1.0 |
| IBMHEKCL_50 | 1.0 | 0.0 | 1.0 |
| IBMHEKCL_51 | 1.0 | 0.0 | 1.0 |
| IBMHEKCL_52 | 1.0 | 0.0 | 1.0 |
| IBMHEKCL_58 | 0.0 | 1.0 | 0.0 |
| IBMHEKCL_68 | 0.0 | 1.0 | 0.0 |
| IBMHEKCL_76 | 0.0 | 1.0 | 0.0 |
| IBMHEKCL_85 | 0.0 | 1.0 | 0.0 |
| IBMHEKCL_96 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| IBMHEKCL_13 | 3 | 27796 | False | Siphoviridae | VOG4605, VOG4545, VOG0800, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG1329, VOG4555, VOG4564, VOG0720, VOG4544, VOG3699, VOG4570, VOG4892, VOG0198, VOG10869, VOG4693, VOG6623, VOG9860, VOG0226, VOG4566, VOG0186, VOG1309, VOG8241, VOG7236, VOG6495, VOG6179, VOG1305, VOG6495 |
| IBMHEKCL_14 | 608 | 18640 | False | Siphoviridae | VOG0519, VOG4544, VOG4556, VOG4573, VOG4553, VOG0204, VOG4589, VOG7880, VOG1898, VOG4545, VOG4633, VOG4763, VOG3498, VOG0648, VOG1637 |
| IBMHEKCL_19 | 21650 | 33026 | False | Siphoviridae | VOG0443, VOG0275, VOG6884, VOG6054, VOG4567, VOG3685, VOG7656, VOG4602, VOG6495, VOG5353, VOG4552 |
Phigaro v2.4.0 (Database: Jan. 2024 release)