Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| MCBINKMK_41 | 283848 | 284552 | WalR | 5.96e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| MCBINKMK_56 | 56592 | 56789 | CspR | 1.61e-32 | cold shock protein | 87.88 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| MCBINKMK_9 | 0.0 | 1.0 | 0.0 |
| MCBINKMK_17 | 0.0 | 1.0 | 0.0 |
| MCBINKMK_28 | 0.0 | 1.0 | 0.0 |
| MCBINKMK_34 | 0.0 | 1.0 | 0.0 |
| MCBINKMK_35 | 0.0 | 1.0 | 0.0 |
| MCBINKMK_36 | 0.0 | 1.0 | 0.0 |
| MCBINKMK_37 | 0.0 | 1.0 | 0.0 |
| MCBINKMK_38 | 0.0 | 1.0 | 0.0 |
| MCBINKMK_39 | 0.0 | 1.0 | 0.0 |
| MCBINKMK_40 | 0.0 | 1.0 | 0.0 |
| MCBINKMK_41 | 0.0 | 1.0 | 0.0 |
| MCBINKMK_43 | 0.0 | 1.0 | 0.0 |
| MCBINKMK_44 | 1.0 | 0.0 | 1.0 |
| MCBINKMK_45 | 1.0 | 0.0 | 1.0 |
| MCBINKMK_49 | 0.0 | 1.0 | 0.0 |
| MCBINKMK_56 | 0.0 | 1.0 | 0.0 |
| MCBINKMK_66 | 0.0 | 1.0 | 0.0 |
| MCBINKMK_77 | 0.0 | 1.0 | 0.0 |
| MCBINKMK_88 | 0.0 | 1.0 | 0.0 |
| MCBINKMK_99 | 0.0 | 1.0 | 0.0 |
| MCBINKMK_110 | 0.0 | 1.0 | 0.0 |
| MCBINKMK_121 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| MCBINKMK_36 | 3877 | 39026 | False | Siphoviridae | VOG9667, VOG3622, VOG0181, VOG10867, VOG4967, VOG3642, VOG0321, VOG0322, VOG0226, VOG4566, VOG0189, VOG6623, VOG4693, VOG6238, VOG0195, VOG0152, VOG3643, VOG0198, VOG3691, VOG4570, VOG10904, VOG4549, VOG4841, VOG4581, VOG4544, VOG3644, VOG4556, VOG4568, VOG4553, VOG5601, VOG0204, VOG4589, VOG0539, VOG0704, VOG4586, VOG2225, VOG6163, VOG4605, VOG4599, VOG4705, VOG7888 |
| MCBINKMK_56 | 76972 | 108558 | False | Siphoviridae | VOG8241, VOG1309, VOG0186, VOG4566, VOG0226, VOG11003, VOG9860, VOG6623, VOG4693, VOG9741, VOG2820, VOG3643, VOG6815, VOG0198, VOG7136, VOG4570, VOG4549, VOG0796, VOG4544, VOG0720, VOG4564, VOG4555, VOG1329, VOG4713, VOG0723, VOG5660, VOG0724, VOG0799, VOG0725, VOG0800, VOG4545, VOG4605, VOG4599, VOG1637, VOG0703 |
Phigaro v2.4.0 (Database: Jan. 2024 release)