Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 1 | 2 | 2.45 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GEDBLLBC_24 | 491 | 1351 | TEM-116 | ARO:3000979 | TEM-116 | 100.00 | 100.00 | U36911.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GEDBLLBC_24 | 491 | 1351 | blaTEM-116 | Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin | 100.00 | 100.00 | AY425988 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GEDBLLBC_24 | 491 | 1348 | blaTEM-116 | broad-spectrum class A beta-lactamase TEM-116 | ALLELEX | 100.00 | 100.00 | WP_000027050.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| GEDBLLBC_27 | 120 | 1258 | ygeH | 0.0 | ETT2 | Effector delivery system | 97.89 | 82.72 | NP_311736 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| GEDBLLBC_2 | 123895 | 124599 | WalR | 7.38e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| GEDBLLBC_7 | 48543 | 48737 | CspR | 2.76e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| GEDBLLBC_7 | 48543 | 48740 | CspA | 4.24e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| GEDBLLBC_24 | 1766 | 1896 | ColRNAI | 131 / 130 | 87.02 | DQ298019 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GEDBLLBC_1 | 0.0 | 1.0 | 0.0 |
| GEDBLLBC_2 | 0.0 | 1.0 | 0.0 |
| GEDBLLBC_3 | 0.0 | 1.0 | 0.0 |
| GEDBLLBC_4 | 0.0 | 1.0 | 0.0 |
| GEDBLLBC_5 | 0.0 | 1.0 | 0.0 |
| GEDBLLBC_6 | 0.0 | 1.0 | 0.0 |
| GEDBLLBC_7 | 0.0 | 1.0 | 0.0 |
| GEDBLLBC_8 | 0.0 | 1.0 | 0.0 |
| GEDBLLBC_9 | 0.0 | 1.0 | 0.0 |
| GEDBLLBC_10 | 1.0 | 0.0 | 1.0 |
| GEDBLLBC_11 | 0.0 | 1.0 | 0.0 |
| GEDBLLBC_12 | 0.0 | 1.0 | 0.0 |
| GEDBLLBC_13 | 0.0 | 1.0 | 0.0 |
| GEDBLLBC_14 | 0.0 | 1.0 | 0.0 |
| GEDBLLBC_15 | 0.0 | 1.0 | 0.0 |
| GEDBLLBC_16 | 0.0 | 1.0 | 0.0 |
| GEDBLLBC_17 | 0.0 | 1.0 | 0.0 |
| GEDBLLBC_18 | 0.0 | 1.0 | 0.0 |
| GEDBLLBC_19 | 0.0 | 1.0 | 0.0 |
| GEDBLLBC_20 | 0.0 | 1.0 | 0.0 |
| GEDBLLBC_21 | 0.0 | 1.0 | 0.0 |
| GEDBLLBC_22 | 0.0 | 1.0 | 0.0 |
| GEDBLLBC_23 | 0.0 | 1.0 | 0.0 |
| GEDBLLBC_24 | 1.0 | 0.0 | 1.0 |
| GEDBLLBC_25 | 0.0 | 1.0 | 0.0 |
| GEDBLLBC_26 | 1.0 | 0.0 | 1.0 |
| GEDBLLBC_27 | 0.0 | 1.0 | 0.0 |
| GEDBLLBC_29 | 0.0 | 1.0 | 0.0 |
| GEDBLLBC_31 | 1.0 | 0.0 | 1.0 |
| GEDBLLBC_33 | 0.0 | 1.0 | 0.0 |
| GEDBLLBC_42 | 0.0 | 1.0 | 0.0 |
| GEDBLLBC_49 | 0.0 | 1.0 | 0.0 |
| GEDBLLBC_50 | 0.0 | 1.0 | 0.0 |
| GEDBLLBC_51 | 0.0 | 1.0 | 0.0 |
| GEDBLLBC_52 | 0.0 | 1.0 | 0.0 |
| GEDBLLBC_53 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GEDBLLBC_22 | 181492 | 208731 | False | Siphoviridae | VOG8870, VOG10957, VOG4599, VOG4605, VOG5904, VOG0660, VOG0209, VOG4586, VOG0207, VOG8239, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG7810, VOG0741, VOG4841, VOG0198, VOG6005, VOG0189, VOG4566, VOG4566 |
| GEDBLLBC_53 | 46759 | 82458 | False | Siphoviridae | VOG11003, VOG6495, VOG0181, VOG7298, VOG1309, VOG0186, VOG4566, VOG2591, VOG4693, VOG0198, VOG5709, VOG0796, VOG4544, VOG0720, VOG7038, VOG4564, VOG10914, VOG3434, VOG1887, VOG4713, VOG1330, VOG0704, VOG4634, VOG1333, VOG4545, VOG1335, VOG10608, VOG3498, VOG8294, VOG1637 |
Phigaro v2.4.0 (Database: Jan. 2024 release)