Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| EIIEGFDG_6 | 11057 | 11761 | WalR | 6.48e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| EIIEGFDG_7 | 78206 | 78012 | CspR | 5.12e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| EIIEGFDG_7 | 78206 | 78009 | CspA | 7.85e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| EIIEGFDG_81 | 649 | 1147 | repUS54 | 500 / 690 | 84.80 | EU185047 |
| EIIEGFDG_45 | 2724 | 3686 | repUS73 | 978 / 1101 | 81.39 | CP002654 |
| EIIEGFDG_80 | 390 | 1345 | repUS64 | 959 / 954 | 81.23 | JN601038 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| EIIEGFDG_1 | 0.0 | 1.0 | 0.0 |
| EIIEGFDG_2 | 0.0 | 1.0 | 0.0 |
| EIIEGFDG_3 | 0.0 | 1.0 | 0.0 |
| EIIEGFDG_4 | 0.0 | 1.0 | 0.0 |
| EIIEGFDG_5 | 0.0 | 1.0 | 0.0 |
| EIIEGFDG_6 | 0.0 | 1.0 | 0.0 |
| EIIEGFDG_7 | 0.0 | 1.0 | 0.0 |
| EIIEGFDG_8 | 0.0 | 1.0 | 0.0 |
| EIIEGFDG_9 | 0.0 | 1.0 | 0.0 |
| EIIEGFDG_10 | 0.0 | 1.0 | 0.0 |
| EIIEGFDG_11 | 0.0 | 1.0 | 0.0 |
| EIIEGFDG_12 | 0.0 | 1.0 | 0.0 |
| EIIEGFDG_13 | 0.0 | 1.0 | 0.0 |
| EIIEGFDG_14 | 0.0 | 1.0 | 0.0 |
| EIIEGFDG_15 | 0.0 | 1.0 | 0.0 |
| EIIEGFDG_16 | 0.0 | 1.0 | 0.0 |
| EIIEGFDG_17 | 0.0 | 1.0 | 0.0 |
| EIIEGFDG_18 | 0.0 | 1.0 | 0.0 |
| EIIEGFDG_19 | 0.0 | 1.0 | 0.0 |
| EIIEGFDG_20 | 0.0 | 1.0 | 0.0 |
| EIIEGFDG_21 | 0.0 | 1.0 | 0.0 |
| EIIEGFDG_22 | 0.0 | 1.0 | 0.0 |
| EIIEGFDG_23 | 0.0 | 1.0 | 0.0 |
| EIIEGFDG_24 | 0.0 | 1.0 | 0.0 |
| EIIEGFDG_25 | 0.0 | 1.0 | 0.0 |
| EIIEGFDG_26 | 0.0 | 1.0 | 0.0 |
| EIIEGFDG_27 | 0.0 | 1.0 | 0.0 |
| EIIEGFDG_28 | 0.0 | 1.0 | 0.0 |
| EIIEGFDG_29 | 0.0 | 1.0 | 0.0 |
| EIIEGFDG_30 | 0.0 | 1.0 | 0.0 |
| EIIEGFDG_31 | 0.0 | 1.0 | 0.0 |
| EIIEGFDG_32 | 0.0 | 1.0 | 0.0 |
| EIIEGFDG_33 | 0.0 | 1.0 | 0.0 |
| EIIEGFDG_34 | 0.0 | 1.0 | 0.0 |
| EIIEGFDG_35 | 0.0 | 1.0 | 0.0 |
| EIIEGFDG_36 | 1.0 | 0.0 | 1.0 |
| EIIEGFDG_37 | 0.0 | 1.0 | 0.0 |
| EIIEGFDG_38 | 1.0 | 0.0 | 1.0 |
| EIIEGFDG_39 | 0.0 | 1.0 | 0.0 |
| EIIEGFDG_40 | 1.0 | 0.0 | 1.0 |
| EIIEGFDG_41 | 0.0 | 1.0 | 0.0 |
| EIIEGFDG_42 | 0.0 | 1.0 | 0.0 |
| EIIEGFDG_43 | 0.0 | 1.0 | 0.0 |
| EIIEGFDG_44 | 0.0 | 1.0 | 0.0 |
| EIIEGFDG_45 | 1.0 | 0.0 | 1.0 |
| EIIEGFDG_46 | 1.0 | 0.0 | 1.0 |
| EIIEGFDG_47 | 1.0 | 0.0 | 1.0 |
| EIIEGFDG_48 | 0.0 | 1.0 | 0.0 |
| EIIEGFDG_49 | 1.0 | 0.0 | 1.0 |
| EIIEGFDG_50 | 1.0 | 0.0 | 1.0 |
| EIIEGFDG_51 | 1.0 | 0.0 | 1.0 |
| EIIEGFDG_52 | 0.0 | 1.0 | 0.0 |
| EIIEGFDG_53 | 1.0 | 0.0 | 1.0 |
| EIIEGFDG_54 | 0.0 | 1.0 | 0.0 |
| EIIEGFDG_55 | 0.0 | 1.0 | 0.0 |
| EIIEGFDG_56 | 0.0 | 1.0 | 0.0 |
| EIIEGFDG_57 | 1.0 | 0.0 | 1.0 |
| EIIEGFDG_58 | 1.0 | 0.0 | 1.0 |
| EIIEGFDG_59 | 1.0 | 0.0 | 1.0 |
| EIIEGFDG_60 | 1.0 | 0.0 | 1.0 |
| EIIEGFDG_61 | 1.0 | 0.0 | 1.0 |
| EIIEGFDG_62 | 0.0 | 1.0 | 0.0 |
| EIIEGFDG_63 | 1.0 | 0.0 | 1.0 |
| EIIEGFDG_64 | 1.0 | 0.0 | 1.0 |
| EIIEGFDG_65 | 1.0 | 0.0 | 1.0 |
| EIIEGFDG_66 | 1.0 | 0.0 | 1.0 |
| EIIEGFDG_67 | 0.0 | 1.0 | 0.0 |
| EIIEGFDG_68 | 1.0 | 0.0 | 1.0 |
| EIIEGFDG_69 | 1.0 | 0.0 | 1.0 |
| EIIEGFDG_70 | 1.0 | 0.0 | 1.0 |
| EIIEGFDG_71 | 1.0 | 0.0 | 1.0 |
| EIIEGFDG_72 | 1.0 | 0.0 | 1.0 |
| EIIEGFDG_73 | 1.0 | 0.0 | 1.0 |
| EIIEGFDG_74 | 1.0 | 0.0 | 1.0 |
| EIIEGFDG_76 | 1.0 | 0.0 | 1.0 |
| EIIEGFDG_77 | 0.0 | 1.0 | 0.0 |
| EIIEGFDG_78 | 1.0 | 0.0 | 1.0 |
| EIIEGFDG_79 | 1.0 | 0.0 | 1.0 |
| EIIEGFDG_80 | 1.0 | 0.0 | 1.0 |
| EIIEGFDG_81 | 1.0 | 0.0 | 1.0 |
| EIIEGFDG_82 | 1.0 | 0.0 | 1.0 |
| EIIEGFDG_83 | 1.0 | 0.0 | 1.0 |
| EIIEGFDG_84 | 1.0 | 0.0 | 1.0 |
| EIIEGFDG_85 | 0.0 | 1.0 | 0.0 |
| EIIEGFDG_86 | 1.0 | 0.0 | 1.0 |
| EIIEGFDG_88 | 1.0 | 0.0 | 1.0 |
| EIIEGFDG_89 | 0.0 | 1.0 | 0.0 |
| EIIEGFDG_90 | 1.0 | 0.0 | 1.0 |
| EIIEGFDG_91 | 1.0 | 0.0 | 1.0 |
| EIIEGFDG_92 | 1.0 | 0.0 | 1.0 |
| EIIEGFDG_93 | 1.0 | 0.0 | 1.0 |
| EIIEGFDG_94 | 1.0 | 0.0 | 1.0 |
| EIIEGFDG_95 | 1.0 | 0.0 | 1.0 |
| EIIEGFDG_96 | 1.0 | 0.0 | 1.0 |
| EIIEGFDG_97 | 1.0 | 0.0 | 1.0 |
| EIIEGFDG_98 | 1.0 | 0.0 | 1.0 |
| EIIEGFDG_99 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| EIIEGFDG_32 | 1044 | 28881 | False | Siphoviridae | VOG0198, VOG0045, VOG0796, VOG4544, VOG0720, VOG7038, VOG4564, VOG10914, VOG3434, VOG1887, VOG4713, VOG1330, VOG0704, VOG4634, VOG1333, VOG4545, VOG1335, VOG10608, VOG3498, VOG8294, VOG1637 |
| EIIEGFDG_33 | 7601 | 26510 | False | Siphoviridae | VOG4632, VOG4609, VOG0205, VOG4841, VOG4581, VOG4544, VOG4556, VOG4568, VOG0204, VOG0198, VOG0275, VOG4821, VOG4602, VOG6495, VOG6495 |
| EIIEGFDG_36 | 4603 | 21030 | False | Siphoviridae | VOG4605, VOG5904, VOG0660, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG10904 |
Phigaro v2.4.0 (Database: Jan. 2024 release)