Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 1 | 0 | 4.12 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| FFFDKOOK_2 | 147718 | 149637 | tet(W) | ARO:3000194 | tet(W) | 96.87 | 100.00 | AJ222769.3 |
| FFFDKOOK_4 | 95843 | 99403 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | ARO:3004480 | Bado_rpoB_RIF | 92.66 | 100.00 | NC_008618.1 |
| FFFDKOOK_14 | 636 | 1496 | TEM-171 | ARO:3001037 | TEM-171 | 100.00 | 100.00 | GQ149347.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| FFFDKOOK_14 | 636 | 1496 | blaTEM-171 | Unknown Beta-lactam | 100.00 | 100.00 | GQ149347 |
| FFFDKOOK_20 | 1 | 464 | catA1 | Chloramphenicol | 99.57 | 70.30 | V00622 |
| FFFDKOOK_2 | 147718 | 149630 | tet(W) | Doxycycline, Tetracycline, Minocycline | 98.85 | 99.58 | FN396364 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| FFFDKOOK_14 | 636 | 1493 | blaTEM-171 | class A beta-lactamase TEM-171 | ALLELEX | 100.00 | 100.00 | WP_015058867.1 |
| FFFDKOOK_2 | 147718 | 149634 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | EXACTX | 100.00 | 100.00 | WP_004217777.1 |
| FFFDKOOK_20 | 3 | 461 | catA1 | type A-1 chloramphenicol O-acetyltransferase | PARTIAL_CONTIG_ENDX | 99.35 | 69.86 | WP_000412211.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| FFFDKOOK_23 | 10 | 414 | flgC | 0.0 | Peritrichous flagella | Motility | 98.77 | 100.00 | WP_001196460 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| FFFDKOOK_14 | 1911 | 2041 | ColRNAI | 131 / 130 | 87.02 | DQ298019 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| FFFDKOOK_1 | 0.0 | 1.0 | 0.0 |
| FFFDKOOK_2 | 0.0 | 1.0 | 0.0 |
| FFFDKOOK_3 | 0.0 | 1.0 | 0.0 |
| FFFDKOOK_4 | 0.0 | 1.0 | 0.0 |
| FFFDKOOK_5 | 0.0 | 1.0 | 0.0 |
| FFFDKOOK_6 | 0.0 | 1.0 | 0.0 |
| FFFDKOOK_7 | 0.0 | 1.0 | 0.0 |
| FFFDKOOK_8 | 0.0 | 1.0 | 0.0 |
| FFFDKOOK_9 | 0.0 | 1.0 | 0.0 |
| FFFDKOOK_10 | 0.0 | 1.0 | 0.0 |
| FFFDKOOK_11 | 0.0 | 1.0 | 0.0 |
| FFFDKOOK_13 | 1.0 | 0.0 | 1.0 |
| FFFDKOOK_14 | 1.0 | 0.0 | 1.0 |
| FFFDKOOK_15 | 1.0 | 0.0 | 1.0 |
| FFFDKOOK_16 | 0.0 | 1.0 | 0.0 |
| FFFDKOOK_17 | 1.0 | 0.0 | 1.0 |
| FFFDKOOK_18 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)