Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| NCGNHNBL_7 | 50775 | 50071 | WalR | 1.05e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| NCGNHNBL_10 | 91550 | 91356 | CspR | 7.06e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| NCGNHNBL_10 | 91550 | 91353 | CspA | 1.08e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NCGNHNBL_1 | 0.0 | 1.0 | 0.0 |
| NCGNHNBL_2 | 0.0 | 1.0 | 0.0 |
| NCGNHNBL_3 | 0.0 | 1.0 | 0.0 |
| NCGNHNBL_4 | 0.0 | 1.0 | 0.0 |
| NCGNHNBL_5 | 0.0 | 1.0 | 0.0 |
| NCGNHNBL_6 | 0.0 | 1.0 | 0.0 |
| NCGNHNBL_7 | 0.0 | 1.0 | 0.0 |
| NCGNHNBL_8 | 0.0 | 1.0 | 0.0 |
| NCGNHNBL_9 | 0.0 | 1.0 | 0.0 |
| NCGNHNBL_10 | 0.0 | 1.0 | 0.0 |
| NCGNHNBL_11 | 0.0 | 1.0 | 0.0 |
| NCGNHNBL_12 | 0.0 | 1.0 | 0.0 |
| NCGNHNBL_13 | 0.0 | 1.0 | 0.0 |
| NCGNHNBL_14 | 1.0 | 0.0 | 1.0 |
| NCGNHNBL_15 | 0.0 | 1.0 | 0.0 |
| NCGNHNBL_16 | 0.0 | 1.0 | 0.0 |
| NCGNHNBL_17 | 0.0 | 1.0 | 0.0 |
| NCGNHNBL_18 | 0.0 | 1.0 | 0.0 |
| NCGNHNBL_19 | 1.0 | 0.0 | 1.0 |
| NCGNHNBL_20 | 0.0 | 1.0 | 0.0 |
| NCGNHNBL_21 | 0.0 | 1.0 | 0.0 |
| NCGNHNBL_22 | 0.0 | 1.0 | 0.0 |
| NCGNHNBL_23 | 1.0 | 0.0 | 1.0 |
| NCGNHNBL_24 | 1.0 | 0.0 | 1.0 |
| NCGNHNBL_25 | 1.0 | 0.0 | 1.0 |
| NCGNHNBL_26 | 1.0 | 0.0 | 1.0 |
| NCGNHNBL_27 | 0.0 | 1.0 | 0.0 |
| NCGNHNBL_28 | 0.0 | 1.0 | 0.0 |
| NCGNHNBL_29 | 1.0 | 0.0 | 1.0 |
| NCGNHNBL_30 | 1.0 | 0.0 | 1.0 |
| NCGNHNBL_32 | 0.0 | 1.0 | 0.0 |
| NCGNHNBL_35 | 1.0 | 0.0 | 1.0 |
| NCGNHNBL_36 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NCGNHNBL_2 | 276336 | 306325 | False | Siphoviridae | VOG0535, VOG0322, VOG6545, VOG5046, VOG0189, VOG0198, VOG6495, VOG2124, VOG3699, VOG10227, VOG0720, VOG4564, VOG10914, VOG1329, VOG4713, VOG9583, VOG0724, VOG0799, VOG0725, VOG6163, VOG4633, VOG4599, VOG4619, VOG4856, VOG9640, VOG0804, VOG4705, VOG4918, VOG0753, VOG0054 |
| NCGNHNBL_7 | 52343 | 62843 | False | Siphoviridae | VOG0198, VOG0204, VOG4553, VOG4556, VOG4544, VOG4581, VOG4841, VOG0205, VOG4609, VOG4632 |
| NCGNHNBL_11 | 46646 | 84277 | False | Siphoviridae | VOG11003, VOG6495, VOG0181, VOG7298, VOG1309, VOG0186, VOG4566, VOG2591, VOG4693, VOG0198, VOG5709, VOG0796, VOG4544, VOG0720, VOG7038, VOG4564, VOG10914, VOG3434, VOG1887, VOG4713, VOG1330, VOG0704, VOG4634, VOG1333, VOG1333, VOG4545, VOG1335, VOG10608, VOG3498, VOG8294, VOG1637, VOG0054 |
Phigaro v2.4.0 (Database: Jan. 2024 release)